View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18004_low_8 (Length: 245)
Name: NF18004_low_8
Description: NF18004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18004_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 17118537 - 17118769
Alignment:
| Q |
12 |
ccaaaaagttatctaatagagtcctacaccccttagctaacccttactcttaagcaaacaaatttcttctccaattttatcccccttcatccaaaccact |
111 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
17118537 |
ccaaaaagttatctagtagagtcctacaccccttagctaactcttcctctaatgcaaacaaatttcttctccaatttcatccccctttatccaaaccact |
17118636 |
T |
|
| Q |
112 |
cgaaatcaccatatcttttacataaacattttttatcaattggaagactaaataatatactaaaatgttcctttagtacctccccatctaatcaaggttc |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||||||| |
|
|
| T |
17118637 |
tgaaatcaccatatcttttacataaaca-ttttgatcaattggaagactaaataatatactaaaatattcctttaatacctccccacctaactaaggttc |
17118735 |
T |
|
| Q |
212 |
atgctcaaaacatagtgttgcgtcaattccctat |
245 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |
|
|
| T |
17118736 |
atactgaaaacatagtgttgcgtcaattccctat |
17118769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 33519741 - 33519798
Alignment:
| Q |
93 |
ccccttcatccaaaccactcgaaatcaccatatcttttacataaacattttttatcaa |
150 |
Q |
| |
|
||||||| ||||||||||| ||| |||||||||| |||||| |||||||||| ||||| |
|
|
| T |
33519741 |
ccccttcctccaaaccacttgaagtcaccatatcctttacacaaacatttttcatcaa |
33519798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 6017069 - 6016997
Alignment:
| Q |
101 |
tccaaaccactcgaaatcaccatatcttttacataaacattttttatcaattggaagactaaataatatacta |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||| ||||||||||| | |||| |||||||||||||| |
|
|
| T |
6017069 |
tccaaaccactcgaaatcaccatatttttcattgaaaccttttttatcaactaaaagattaaataatatacta |
6016997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University