View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18005_low_1 (Length: 553)
Name: NF18005_low_1
Description: NF18005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18005_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 92 - 537
Target Start/End: Complemental strand, 3525135 - 3524689
Alignment:
| Q |
92 |
tatcaaatatctctctctgtatgcattaaacaaaatcattgtttatcgttgtnnnnnnntatattgaagtttatattttatattaaattctttaaagtaa |
191 |
Q |
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| T |
3525135 |
tatcaaatatatctctctatatgcattaaacaaaatcattgtttatcgttgtaaaaaaatatattgaagtttatattttatattaaattctttaaagtaa |
3525036 |
T |
|
| Q |
192 |
gactcaaagttaaatacatctagggctccttatgcaagtatgctaacgttagatcccaaccacacat-attttttaaaatataaaatgttagggattatt |
290 |
Q |
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|| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |
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| T |
3525035 |
gaatcaaagttaaatacaactagggtttcttatgcaattatgctaacgttagatcccaaccacacatgattttttaaaatataaaatgttagagcttatt |
3524936 |
T |
|
| Q |
291 |
taaaagtttatttagctaaacatactaggttacaatccacataaagtttttcagatctatcaagtcggcataccaaatggtaaatgtttgaatcagctaa |
390 |
Q |
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|||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
3524935 |
taaaagtttatttagctaaacatatcaggttacgactcacataaagtctttcagatctataaagtcggtataccaaatggtaaatgtttgaatcagctaa |
3524836 |
T |
|
| Q |
391 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagtttattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524835 |
atagaattttggtcttcattcaatggttaacagagtgggggatttgagttaattggttttgaataaggatgtttttgccctcttgtcacaaatttgataa |
3524736 |
T |
|
| Q |
491 |
tcatgattgaggaccaacaatgttttactttaataatcataatcatt |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524735 |
tcatgattgaggaccaacaatgttttactttaataatcataatcatt |
3524689 |
T |
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