View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18005_low_2 (Length: 522)
Name: NF18005_low_2
Description: NF18005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18005_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 248381 - 248890
Alignment:
| Q |
1 |
cacaagaggaatccaagttgtggggtccccttcccctaaaataaaaggaggtgattgagggtggtgtaggataaggatattgagtaagaggaagagaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
248381 |
cacaagaggaatccaagttgtggggtccccttcccctaaaataaaaggaggtgattgagggtggtataggataaggatattgagtaagagggagagaagg |
248480 |
T |
|
| Q |
101 |
gtcacccaatcctaaacttaatgaaagggatccaaggaaagaaaagaatgtactaggatgaattttgtctaattttgttttggtataccnnnnnnntctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
248481 |
gtcacccaatcctaaacttaatgaaagggatccaaggaaagaaaagaatgtactaggatgaattttgtctaattttgttttggtataccaaaaaaatctc |
248580 |
T |
|
| Q |
201 |
acattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatttgtgaagtgaagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248581 |
acattacttgaaaaccgaggttacgaacttacgagtaatttataaacacgcactcaattgaacaacgacttttaactaagccgcatttgtgaagtgaagt |
248680 |
T |
|
| Q |
301 |
ttctataatatctaaagtggacaatacctcggaagaaattaaaatccaaatgaattaatttgagcataaggtagtattgatcatattttgaggtggcttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248681 |
ttctataatatctaaagtggacaatacctcagaagaaattaaaatccaaatgaattaatttgagcataaggtagtattgatcatattttgaggtggcttg |
248780 |
T |
|
| Q |
401 |
taactaagagctcccaagctgtatacacataggttattctcttgttttaatatctgactacttcctgtgctcttcaagaaaggaacattgcaagaataag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248781 |
taactaagagctcccaagctgtatacacataggttattctcttgttttaatatctgactacttcctgtgctcttcaagaaaggaacattgcaagaataag |
248880 |
T |
|
| Q |
501 |
aagatgatga |
510 |
Q |
| |
|
|||||||||| |
|
|
| T |
248881 |
aagatgatga |
248890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University