View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18005_low_4 (Length: 409)
Name: NF18005_low_4
Description: NF18005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18005_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 392
Target Start/End: Complemental strand, 1439351 - 1438968
Alignment:
| Q |
10 |
ataatactggtaggatggctgaacctcagcttgaacacagaccccagttttcagtatctttgcatgattttaaagttgcgatggagctaaatccacagca |
109 |
Q |
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| T |
1439351 |
ataatactggtaggatggctgaacctcagcttgaacacagaccccagttttcagtatctttgcatgattttaaagttgcgatggagctaaatccacagca |
1439252 |
T |
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| Q |
110 |
acttggagaagattggccactacagttggagaaaatttctatgcaatcctttgaagaataacacatcaataaagannnnnnnnn-cttacgtttacttga |
208 |
Q |
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| T |
1439251 |
acttggagaagattggccactacagttggagaaaatttctatgcaatcctttgaagaataacacatcaataaagattttttttttcttacgtttacttga |
1439152 |
T |
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| Q |
209 |
gcaaatgttgggtcaggttcttctggttctgatagctcggcgatagttgtggtgattattgctgtactttgcactgtttatattgccatgatgaaccaga |
308 |
Q |
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| T |
1439151 |
gcaaatgttgggtcaggttcttctggttctgatagctcggcgatagttgtggtgattattgctgtactttgcactgtttatattgccatgatgaaccaga |
1439052 |
T |
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| Q |
309 |
agactcccgaatagggatttttagcccttccaggatcaaatgctggcttcgagcttcaaaatgttttatctctgccatgtggag |
392 |
Q |
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| T |
1439051 |
agactcccgaatagggatttttagcccttccaggatcaaatgctggcttcgagcttcaaaatgttttatctctgccatgtggag |
1438968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 1450824 - 1450985
Alignment:
| Q |
16 |
ctggtaggatggctgaacctcagcttgaacacagaccccagttttcagtatctttgcatgattttaaagttgcgatggagctaaatccacagcaacttgg |
115 |
Q |
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| T |
1450824 |
ctggtaggttggctgaatctgaacccgaacacagatctcagttctcggtatctttgcatgattttaaagttgcgatggagctaaatccaaagcaacttgg |
1450923 |
T |
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| Q |
116 |
agaagattggccactacagttggagaaaatttctatgcaatcctttgaagaataacacatca |
177 |
Q |
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| T |
1450924 |
agaagattggccactgcaatcggagaaaatttcgatgcaatcttttgagaaataacagatca |
1450985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 1451093 - 1451168
Alignment:
| Q |
301 |
gaaccagaagactcccgaatagggatttttagcccttccaggatcaaatgctggcttcgagcttcaaaatgtttta |
376 |
Q |
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| T |
1451093 |
gaaccagatgactcccaaacgggaatttctagcccttccaggatcaaatgctggtttcgagctttcaaatgtttta |
1451168 |
T |
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