View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18005_low_5 (Length: 389)
Name: NF18005_low_5
Description: NF18005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18005_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 51459259 - 51459622
Alignment:
| Q |
1 |
aaacaaacagtgtactacgtaacgtgttatttcgttcactttcatcattgacccatataattctctatnnnnnnnnccattgactcatataactatggtt |
100 |
Q |
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| T |
51459259 |
aaacaaacagtgtactacgtaacgtgttatttcgttcactttcatcattgacccatataatcctctataaaaaaaaccattcactcgtataactatggtt |
51459358 |
T |
|
| Q |
101 |
gaatgggaatgagtcaaaatatattgatannnnnnnnnnncgaggtacaaatatattgataacttaaaattaaaacccacttcactaaaattgggatatt |
200 |
Q |
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| T |
51459359 |
gaatgggaatgagtcaaaatatattgatatttttttttt-cgaggtacaaatatattgataacttaaaa------cccaattcactaaaattgggatatt |
51459451 |
T |
|
| Q |
201 |
ttttattccaccaagaaaggtgannnnnnnnncactaaaaaggttacgttttctggtaattctaaaagttacgtttgtttgtttgnnnnnnnnnnnnnaa |
300 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |
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| T |
51459452 |
ttttattccaccaagaaagttgatttcttta-cactaaaaaggttacgttttctggtaattctaaaagttacgttttttttttt--ttttttttttttaa |
51459548 |
T |
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| Q |
301 |
gaataaaagttacgtttgttatagactaataaaagatattttatatg-tttaaaatgattctatgagaagcact |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51459549 |
gaataaaagttacgtttgttatagactaataaaagatattttatatgttttaaaatgattctatgagaagcact |
51459622 |
T |
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