View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18005_low_7 (Length: 264)
Name: NF18005_low_7
Description: NF18005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18005_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 19535155 - 19535374
Alignment:
| Q |
18 |
aatggagtgtacaacgaaggtaacatcctaagtcggctctcaccataacctttgacattatttggtactcaatttcatgctgtctcaattaactctac-- |
115 |
Q |
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| T |
19535155 |
aatggagtgtacaacgaaggtaacatcctaagtcggctctcaccataacctttgacattatttggtactcaatttcatgctgtctcaattaactctacta |
19535254 |
T |
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| Q |
116 |
tactataataatattaagtcttcacttaacagtagattcctacgagttattaattataatggtataactcatttctgtcaccaaaatacttgagtttgtt |
215 |
Q |
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| T |
19535255 |
tactataataatattaagtcttcacttaacagtagattcctacgagttattaattata---------------------accaaaatacttgagtttgtt |
19535333 |
T |
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| Q |
216 |
atacctcttacatctttttcatttcctaatgcattcttttt |
256 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19535334 |
atacctcttacatctttttcatttcataatgcattcttttt |
19535374 |
T |
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