View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_high_11 (Length: 408)
Name: NF18006_high_11
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 44914116 - 44913740
Alignment:
| Q |
16 |
aatatattagcaacacaactttaatgtttgagatcatcaagagttcactacaaatattgaggttgaatcaatagagaaatgaggaataaaattataatgt |
115 |
Q |
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| T |
44914116 |
aatatattagcaacagaactttaatgtttgagatcatcaagagttcactacaaatattgaggttgaatcaatagagaaatgaggaataaaattataatgt |
44914017 |
T |
|
| Q |
116 |
gagacacaacatttttacatgtcatttaaagatgctctaattgaaggaaataaagctttatataaggaataataaataatacatgccaagatcctttcaa |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44914016 |
gagacaaaacatttttacatgtcatttaaagatgctctaattgaaggaaataaagctttatataaggaataataaataatacatgccaagatcctttcga |
44913917 |
T |
|
| Q |
216 |
aaatctgctcagagcgaccaaataacagcttaagtaccactagcaaccaagtgaaaaatatgaatacgaagatcaagtcagtagtgtataagatgatctt |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44913916 |
aaatctgcacagagcgaccaaataacagcttaagtaccactagcaaccaagtgaaaaatatgaatacgaagatcaagtcagtagtgtataagatgatctt |
44913817 |
T |
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| Q |
316 |
ataagtaataattaccatgataaatccagtatcatcagggtctagttcttccatgatcaaagcagcatattcctctg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44913816 |
ataagtaataattaccatgataaatccagtatcatcagggtctagttcttccatgatcaaagcagcatattcctctg |
44913740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 386
Target Start/End: Complemental strand, 44884708 - 44884670
Alignment:
| Q |
348 |
catcagggtctagttcttccatgatcaaagcagcatatt |
386 |
Q |
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| T |
44884708 |
catcaggatctagttcttccatgatcaaagcagcatatt |
44884670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 39982187 - 39982119
Alignment:
| Q |
324 |
taattaccatgataaatccagtatcatcagggtctagttcttccatgatcaaagcagcatattcctctg |
392 |
Q |
| |
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||||||||| |||| |||| || ||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
39982187 |
taattaccaagatatatcctgtgtcatccgggtctagttcttccatgatcaaagccgcatattcctctg |
39982119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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