View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_high_12 (Length: 367)
Name: NF18006_high_12
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_high_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 7897534 - 7897155
Alignment:
| Q |
1 |
aggtttgtttttaagacaaggaaaaagacaaagaaaacctctaaaaccttgattctctttgacaacnnnnnnnnnn-ctttgatattttgacatctatac |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||| || |
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| T |
7897534 |
aggtttgtttttaagacaaggaaaaagacaaagaaaacctctaaaaccttgaatgtctttgacaacaaaaaaaaaaactttgatattttgac-tctagac |
7897436 |
T |
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| Q |
100 |
cgtgaaaacagacctcaaatttagttattttattttttgttacaaattattttgttactctctta------------ttagatgaattcatgtaattttc |
187 |
Q |
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| T |
7897435 |
cgtgaaaacagaccccaaatttagttattttattttttgttacaaattattttgttactctcttaatcttatcaaagttagatgaattcatgtaattttc |
7897336 |
T |
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| Q |
188 |
tagactcaatatgagttattttttattttgcagcggactcgccaggcggttattttaagaaatttacgaggagaaaagcatcgggggatccatcggagag |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7897335 |
tagactcaatatgagttattttttattttgcagcggacacgccaggcggttattttaagaaattcacgaggagaaaagcatcgggggatccatcggagag |
7897236 |
T |
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| Q |
288 |
ctccgattatcgaagtccgactatttccgattggttatctattttccattttttgccatgaa-aaaatattcatgtcacct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
7897235 |
ctccgattatcgaagtccgactatttccgattggttatctattttccattttttgccatgaaaaaaatattcatgtgacct |
7897155 |
T |
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