View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_high_13 (Length: 347)

Name: NF18006_high_13
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_high_13
NF18006_high_13
[»] chr6 (4 HSPs)
chr6 (1-330)||(18246394-18246723)
chr6 (1-258)||(2920785-2921041)
chr6 (179-270)||(1034267-1034358)
chr6 (130-215)||(32548934-32549018)
[»] chr3 (3 HSPs)
chr3 (1-330)||(1259141-1259470)
chr3 (1-330)||(37242429-37242758)
chr3 (179-231)||(53553676-53553728)
[»] chr4 (1 HSPs)
chr4 (1-330)||(16989514-16989843)
[»] chr7 (1 HSPs)
chr7 (1-330)||(31234592-31234922)
[»] chr8 (5 HSPs)
chr8 (262-330)||(2319545-2319613)
chr8 (138-246)||(37269828-37269936)
chr8 (153-267)||(36404064-36404178)
chr8 (138-246)||(42941232-42941340)
chr8 (179-269)||(8273805-8273895)
[»] chr5 (1 HSPs)
chr5 (179-272)||(36988995-36989088)
[»] chr2 (2 HSPs)
chr2 (191-272)||(11272496-11272577)
chr2 (138-214)||(33858639-33858715)
[»] scaffold0760 (1 HSPs)
scaffold0760 (138-246)||(1707-1815)
[»] chr1 (1 HSPs)
chr1 (153-269)||(32774127-32774243)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 18246394 - 18246723
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18246394 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 18246493  T
101 taacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcataga 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
18246494 taacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcataga 18246593  T
201 agaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18246594 agaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 18246693  T
301 tagttaaatcatatgaaaaattaattaaaa 330  Q
    ||||||||||||||||||||||||||||||    
18246694 tagttaaatcatatgaaaaattaattaaaa 18246723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2920785 - 2921041
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 100  Q
    ||||||||||||||||||| ||| ||| | ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||||||    
2920785 caagtagaaaataagcacatataaacaag-aagggtggaaacaaaccaaattccaaaaaagtaaatttacaaaatccctcccatagatctgcaccaacaa 2920883  T
101 taacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcataga 200  Q
    ||||||| ||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |    
2920884 taacgctccagctacaacaacacagaaaggcagattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaa 2920983  T
201 agaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaat 258  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||    
2920984 agaggaaagaagctatctttaacctactcaacatccaaacccaagaaagtgctttaat 2921041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 1034358 - 1034267
Alignment:
179 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactat 270  Q
    |||||||| ||||||||||| |||||||| || |||| ||| || ||||||||| |||||| |||||||| ||||||||| |||| ||||||    
1034358 ggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaagaaaccgctttaatctcatccactat 1034267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 32549018 - 32548934
Alignment:
130 gcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagcta 215  Q
    ||||||||||||| |||||  | |||||||||| |||||||||| ||  |||||| | ||||||| ||| |||| |||||||||||    
32549018 gcagattcaaaaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaaga-gaaagaagcta 32548934  T

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Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 1259141 - 1259470
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1259141 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 1259240  T
101 taacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcataga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
1259241 taacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcataga 1259340  T
201 agaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1259341 agaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 1259440  T
301 tagttaaatcatatgaaaaattaattaaaa 330  Q
    ||||||||||||||||||||||||||||||    
1259441 tagttaaatcatatgaaaaattaattaaaa 1259470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37242429 - 37242758
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
37242429 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccataaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 37242528  T
101 taacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcataga 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
37242529 taacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcataga 37242628  T
201 agaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37242629 agaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 37242728  T
301 tagttaaatcatatgaaaaattaattaaaa 330  Q
    ||||||||||||||||||||||||||||||    
37242729 tagttaaatcatatgaaaaattaattaaaa 37242758  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 53553676 - 53553728
Alignment:
179 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaa 231  Q
    |||||||| ||||||||||| |||||||||||||||| ||| || ||||||||    
53553676 ggattccaagtccactcataaaagaggaaagaagctatctttaatctactcaa 53553728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 16989843 - 16989514
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16989843 caagtagaaaataagcacaaatatacatggaagggcggaaacaagccaaactccaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaacaa 16989744  T
101 taacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcataga 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
16989743 taacgctccagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcataga 16989644  T
201 agaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 300  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16989643 agaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacca 16989544  T
301 tagttaaatcatatgaaaaattaattaaaa 330  Q
    ||||||||||||||||||||||||||||||    
16989543 tagttaaatcatatgaaaaattaattaaaa 16989514  T

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Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 31234592 - 31234922
Alignment:
1 caagtagaaaataagcacagatatacatggaagggcggaaacaagccaaactccaaaa-aagtaaatttacaaaatccctcccatagaaccgcaccaaca 99  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
31234592 caagtagaaaataagcacagatatacatggaagggcggaaacaatccaaactccaaaaaaagtaaatttacaaaatccctcccatagaaccgcaccaaca 31234691  T
100 ataacgcttcagctacaacagcacaaaaaggcagattcaaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatag 199  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||||    
31234692 ataacgctctagctacaacatcacaaaaaggcagattcaaaaagacagtcgtgttcatcttctgtttagacattctcgtggattccaagtccactcatag 31234791  T
200 aagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacc 299  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31234792 aagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgctttaatttcattcactattttagtttgtttactctaattttcaaacc 31234891  T
300 atagttaaatcatatgaaaaattaattaaaa 330  Q
    |||||||||||||||||||||||||||||||    
31234892 atagttaaatcatatgaaaaattaattaaaa 31234922  T

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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 2319613 - 2319545
Alignment:
262 attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2319613 attcactattttagtttgtttactctaattttcaaaccatagttaaatcatatgaaaaattaattaaaa 2319545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 37269828 - 37269936
Alignment:
138 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 237  Q
    |||||||||||||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| |||    
37269828 aaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacaccca 37269927  T
238 aatccaaga 246  Q
    || ||||||    
37269928 aaaccaaga 37269936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 36404064 - 36404178
Alignment:
153 ttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgc 252  Q
    |||||||||| |||| ||||| ||  |||||||| |||||||| ||||||||||| ||||||| ||| |  |||||||||  ||||| |||||| | | |    
36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccac 36404163  T
253 tttaatttcattcac 267  Q
    ||| |||||||||||    
36404164 tttgatttcattcac 36404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 138 - 246
Target Start/End: Complemental strand, 42941340 - 42941232
Alignment:
138 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 237  Q
    |||||||||||||  |||||||||| ||  |||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| ||     
42941340 aaaaagacagccggcttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagtctactcaacacccc 42941241  T
238 aatccaaga 246  Q
    || ||||||    
42941240 aaaccaaga 42941232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 8273895 - 8273805
Alignment:
179 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcacta 269  Q
    ||||||||  |||||||||| |||||||||||||||| ||| || ||||||  | |||||| |||||||| ||| ||||| |||| |||||    
8273895 ggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccacta 8273805  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 36989088 - 36988995
Alignment:
179 ggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattt 272  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||| ||||| ||||||||||    
36989088 ggattccacgtccacttatagaagaggaaagaagctatcttcaacctactcaacaaccaaacccaagaaaccgctttgatttcgttcactattt 36988995  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 11272577 - 11272496
Alignment:
191 cactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgctttaatttcattcactattt 272  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||||| |||||| ||||||||||| ||||    
11272577 cactcatagaagaggaaagaagctatctttaacctactcaacgtccaaacccaagaaaccgctttgatttcattcacaattt 11272496  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 33858639 - 33858715
Alignment:
138 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagct 214  Q
    ||||| |||||| |||||||||||| |||||||||| ||| |||||||| ||||||||||| |||||||| ||||||    
33858639 aaaaaaacagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagct 33858715  T

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Target: scaffold0760 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 1707 - 1815
Alignment:
138 aaaaagacagccgcgttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatcca 237  Q
    |||||||||| ||  |||||||||| || ||||||| ||  |||||||| ||||||||||| |||||||| ||||||| ||| |  |||||||||| |||    
1707 aaaaagacagtcggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagtctactcaacaccca 1806  T
238 aatccaaga 246  Q
    || ||||||    
1807 aaaccaaga 1815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 269
Target Start/End: Original strand, 32774127 - 32774243
Alignment:
153 ttcatcttctgtttagacattttcgtggattccacgtccactcatagaagaggaaagaagctaccttcaacctactcaacatccaaatccaagaaagcgc 252  Q
    |||||||||| ||||| || | ||  |||||||| ||||||||||| |||||||| || |||| ||| || ||||||||| |||||| |||||||| |||    
32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
253 tttaatttcattcacta 269  Q
    ||| || |||| |||||    
32774227 tttgatctcatccacta 32774243  T

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