View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_high_20 (Length: 273)

Name: NF18006_high_20
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_high_20
NF18006_high_20
[»] chr7 (38 HSPs)
chr7 (97-257)||(46317844-46318008)
chr7 (11-82)||(36819696-36819767)
chr7 (17-82)||(32619138-32619203)
chr7 (11-82)||(2400285-2400356)
chr7 (11-82)||(19072769-19072840)
chr7 (11-82)||(28185598-28185669)
chr7 (11-82)||(42086828-42086899)
chr7 (11-82)||(47080980-47081051)
chr7 (11-82)||(47713692-47713763)
chr7 (17-82)||(47713775-47713840)
chr7 (11-82)||(23474159-23474230)
chr7 (11-82)||(31466548-31466619)
chr7 (11-82)||(37951135-37951206)
chr7 (11-82)||(44479910-44479981)
chr7 (11-81)||(31110625-31110693)
chr7 (11-82)||(36859398-36859469)
chr7 (11-82)||(36905526-36905597)
chr7 (17-82)||(4612283-4612348)
chr7 (11-82)||(42834482-42834553)
chr7 (12-76)||(4033297-4033361)
chr7 (11-82)||(21392018-21392089)
chr7 (12-60)||(38198503-38198551)
chr7 (11-82)||(10464305-10464376)
chr7 (11-82)||(34478201-34478272)
chr7 (11-82)||(37231754-37231825)
chr7 (11-78)||(48531326-48531393)
chr7 (12-60)||(33613238-33613286)
chr7 (47-82)||(10464115-10464150)
chr7 (47-82)||(31466358-31466393)
chr7 (47-82)||(34478008-34478043)
chr7 (11-82)||(35500937-35501008)
chr7 (47-82)||(36643965-36644000)
chr7 (47-82)||(36819922-36819957)
chr7 (47-82)||(36905752-36905787)
chr7 (47-82)||(37950945-37950980)
chr7 (47-82)||(47081206-47081241)
chr7 (12-82)||(40348410-40348480)
chr7 (12-82)||(42493821-42493891)
[»] chr5 (38 HSPs)
chr5 (11-82)||(29627268-29627339)
chr5 (11-82)||(23988579-23988650)
chr5 (11-82)||(35448187-35448258)
chr5 (11-82)||(32334830-32334901)
chr5 (11-82)||(38697963-38698034)
chr5 (11-82)||(40512870-40512941)
chr5 (11-82)||(42148307-42148378)
chr5 (11-81)||(5364421-5364491)
chr5 (11-82)||(39894781-39894852)
chr5 (12-82)||(5213113-5213183)
chr5 (11-82)||(4925028-4925099)
chr5 (11-82)||(32002204-32002275)
chr5 (11-82)||(35290286-35290357)
chr5 (11-82)||(37516144-37516215)
chr5 (17-82)||(37843771-37843836)
chr5 (23-82)||(16954690-16954749)
chr5 (11-82)||(39036410-39036481)
chr5 (11-82)||(41411348-41411419)
chr5 (12-82)||(30779936-30780006)
chr5 (11-75)||(14475424-14475488)
chr5 (11-75)||(43517250-43517314)
chr5 (11-82)||(1830654-1830725)
chr5 (11-82)||(40316121-40316192)
chr5 (37-82)||(37304361-37304406)
chr5 (11-82)||(970138-970209)
chr5 (47-82)||(970364-970399)
chr5 (47-82)||(4299833-4299868)
chr5 (47-82)||(22613709-22613744)
chr5 (47-82)||(29627494-29627529)
chr5 (47-82)||(35447997-35448032)
chr5 (47-82)||(42148533-42148568)
chr5 (11-82)||(43067229-43067300)
chr5 (8-54)||(19868872-19868918)
chr5 (12-82)||(39405764-39405834)
chr5 (12-53)||(21961256-21961297)
chr5 (11-63)||(4300022-4300074)
chr5 (11-63)||(22613899-22613951)
chr5 (18-82)||(25946294-25946358)
[»] chr2 (34 HSPs)
chr2 (11-82)||(18718239-18718310)
chr2 (11-82)||(14372077-14372148)
chr2 (11-82)||(23671376-23671447)
chr2 (11-79)||(14707724-14707792)
chr2 (11-82)||(27559575-27559646)
chr2 (11-82)||(34826912-34826983)
chr2 (11-82)||(40425439-40425510)
chr2 (11-82)||(41172947-41173018)
chr2 (11-82)||(42038523-42038594)
chr2 (11-82)||(3987422-3987493)
chr2 (11-82)||(4045423-4045494)
chr2 (11-82)||(7443081-7443152)
chr2 (11-82)||(16942001-16942072)
chr2 (11-82)||(17012666-17012737)
chr2 (11-82)||(20517419-20517490)
chr2 (11-82)||(44283469-44283540)
chr2 (11-82)||(44330384-44330455)
chr2 (11-81)||(41463707-41463777)
chr2 (11-75)||(38588079-38588143)
chr2 (11-82)||(9877273-9877344)
chr2 (11-82)||(30708728-30708799)
chr2 (11-82)||(32776090-32776161)
chr2 (11-67)||(36199141-36199197)
chr2 (12-60)||(4083229-4083277)
chr2 (12-75)||(5030462-5030525)
chr2 (11-82)||(38963519-38963590)
chr2 (11-82)||(40598128-40598199)
chr2 (47-82)||(14707535-14707570)
chr2 (47-82)||(18718465-18718500)
chr2 (47-82)||(23671602-23671637)
chr2 (47-82)||(40425249-40425284)
chr2 (48-82)||(20917729-20917763)
chr2 (47-80)||(44283281-44283314)
chr2 (26-82)||(22883012-22883068)
[»] chr8 (31 HSPs)
chr8 (11-82)||(29790942-29791013)
chr8 (11-82)||(38845200-38845271)
chr8 (11-82)||(30289924-30289995)
chr8 (11-82)||(40013651-40013722)
chr8 (11-82)||(43066127-43066198)
chr8 (11-82)||(45081812-45081883)
chr8 (12-82)||(38739657-38739727)
chr8 (11-82)||(1580955-1581026)
chr8 (11-82)||(2805666-2805737)
chr8 (11-82)||(3293292-3293363)
chr8 (11-82)||(37709899-37709970)
chr8 (11-82)||(6470845-6470916)
chr8 (11-82)||(13138322-13138393)
chr8 (11-82)||(30380530-30380601)
chr8 (17-82)||(2986339-2986404)
chr8 (11-80)||(23248779-23248848)
chr8 (11-82)||(8351070-8351141)
chr8 (17-82)||(39361128-39361190)
chr8 (11-82)||(44123673-44123744)
chr8 (47-82)||(2805476-2805511)
chr8 (11-54)||(12893559-12893602)
chr8 (11-82)||(14522380-14522451)
chr8 (11-82)||(14847210-14847281)
chr8 (47-82)||(18809502-18809537)
chr8 (47-82)||(23249078-23249113)
chr8 (47-82)||(30290150-30290185)
chr8 (47-82)||(31127805-31127840)
chr8 (47-82)||(45082038-45082073)
chr8 (17-82)||(45253749-45253815)
chr8 (11-60)||(886257-886306)
chr8 (45-82)||(29708785-29708822)
[»] chr6 (17 HSPs)
chr6 (11-82)||(643621-643692)
chr6 (11-82)||(11114565-11114636)
chr6 (11-82)||(31854818-31854889)
chr6 (11-82)||(22020276-22020347)
chr6 (11-82)||(24150741-24150812)
chr6 (17-82)||(18991904-18991969)
chr6 (18-82)||(30237165-30237229)
chr6 (11-82)||(8796050-8796121)
chr6 (11-82)||(33121542-33121613)
chr6 (12-82)||(20662250-20662321)
chr6 (11-82)||(25435412-25435482)
chr6 (11-82)||(29403644-29403715)
chr6 (11-82)||(7098063-7098130)
chr6 (11-57)||(29986348-29986394)
chr6 (11-60)||(13207143-13207192)
chr6 (47-82)||(20662059-20662094)
chr6 (47-82)||(29979024-29979059)
[»] chr4 (49 HSPs)
chr4 (11-82)||(3901329-3901400)
chr4 (11-82)||(5744273-5744344)
chr4 (11-82)||(46212540-46212611)
chr4 (11-82)||(46803631-46803702)
chr4 (12-82)||(6494588-6494658)
chr4 (11-82)||(3442534-3442605)
chr4 (11-82)||(4264134-4264205)
chr4 (11-82)||(5735271-5735342)
chr4 (11-82)||(28166274-28166345)
chr4 (11-82)||(45198530-45198601)
chr4 (11-82)||(47579287-47579358)
chr4 (11-82)||(7739009-7739080)
chr4 (11-82)||(21859109-21859180)
chr4 (11-82)||(21914972-21915043)
chr4 (11-82)||(26205894-26205965)
chr4 (17-80)||(28151993-28152056)
chr4 (11-82)||(39786546-39786617)
chr4 (11-80)||(49768447-49768516)
chr4 (11-77)||(20678777-20678843)
chr4 (11-77)||(37688223-37688289)
chr4 (11-82)||(18360163-18360234)
chr4 (11-82)||(36602694-36602765)
chr4 (11-82)||(55190904-55190975)
chr4 (12-82)||(39195672-39195742)
chr4 (17-82)||(23255935-23256000)
chr4 (11-82)||(4209363-4209434)
chr4 (11-82)||(5123347-5123418)
chr4 (11-82)||(1377032-1377103)
chr4 (11-62)||(53568374-53568425)
chr4 (11-82)||(19525904-19525975)
chr4 (11-82)||(19634038-19634109)
chr4 (11-82)||(50035539-50035610)
chr4 (23-60)||(14958030-14958067)
chr4 (11-60)||(19731355-19731404)
chr4 (47-82)||(3442344-3442379)
chr4 (47-82)||(5735497-5735532)
chr4 (47-82)||(7738819-7738854)
chr4 (11-82)||(19652445-19652516)
chr4 (11-82)||(25644359-25644430)
chr4 (47-82)||(28152217-28152252)
chr4 (47-82)||(45198340-45198375)
chr4 (47-82)||(47579512-47579547)
chr4 (11-82)||(50033020-50033091)
chr4 (12-82)||(19170730-19170800)
chr4 (11-60)||(26659862-26659911)
chr4 (12-53)||(39193941-39193982)
chr4 (11-63)||(6923130-6923182)
chr4 (54-82)||(19170539-19170567)
chr4 (47-79)||(19525717-19525749)
[»] chr1 (46 HSPs)
chr1 (11-82)||(25531778-25531849)
chr1 (11-82)||(48219832-48219903)
chr1 (12-82)||(48265002-48265072)
chr1 (11-82)||(32988539-32988610)
chr1 (11-82)||(39354454-39354525)
chr1 (11-82)||(50539260-50539331)
chr1 (11-82)||(52378989-52379060)
chr1 (11-82)||(50876364-50876435)
chr1 (11-81)||(49805442-49805512)
chr1 (11-82)||(38458729-38458800)
chr1 (17-82)||(30529246-30529311)
chr1 (11-82)||(3529176-3529247)
chr1 (11-82)||(23569864-23569935)
chr1 (17-82)||(42708504-42708569)
chr1 (18-82)||(32565746-32565810)
chr1 (11-77)||(45235035-45235101)
chr1 (11-71)||(29161853-29161913)
chr1 (11-63)||(47222233-47222285)
chr1 (11-78)||(4605002-4605069)
chr1 (11-82)||(16751643-16751714)
chr1 (12-82)||(37281092-37281162)
chr1 (11-60)||(38738168-38738217)
chr1 (11-67)||(1849714-1849770)
chr1 (11-79)||(16266165-16266233)
chr1 (47-82)||(3898571-3898606)
chr1 (11-82)||(3898761-3898832)
chr1 (11-82)||(16265033-16265104)
chr1 (47-82)||(16265259-16265294)
chr1 (47-82)||(16266388-16266423)
chr1 (47-82)||(25532004-25532039)
chr1 (11-82)||(26441637-26441708)
chr1 (47-82)||(26441860-26441895)
chr1 (47-82)||(30529050-30529085)
chr1 (23-54)||(31698790-31698821)
chr1 (47-82)||(39354264-39354299)
chr1 (11-82)||(43680069-43680140)
chr1 (47-82)||(43680296-43680331)
chr1 (47-82)||(48264811-48264846)
chr1 (11-82)||(48376158-48376229)
chr1 (11-82)||(50481278-50481349)
chr1 (47-82)||(50876590-50876625)
chr1 (17-79)||(14075738-14075800)
chr1 (18-60)||(23391279-23391321)
chr1 (11-65)||(31971577-31971631)
chr1 (17-82)||(24982351-24982416)
chr1 (54-82)||(23569674-23569702)
[»] scaffold0027 (2 HSPs)
scaffold0027 (12-82)||(117321-117391)
scaffold0027 (47-79)||(117547-117579)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-82)||(44298-44369)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-82)||(41407-41478)
[»] chr3 (40 HSPs)
chr3 (11-82)||(7460010-7460081)
chr3 (11-82)||(18659052-18659123)
chr3 (11-82)||(43137851-43137922)
chr3 (11-82)||(52668675-52668746)
chr3 (11-82)||(54840318-54840389)
chr3 (12-82)||(8559196-8559266)
chr3 (17-82)||(37832900-37832965)
chr3 (11-82)||(21906996-21907067)
chr3 (11-75)||(38833671-38833735)
chr3 (11-82)||(1327311-1327382)
chr3 (11-82)||(34827322-34827393)
chr3 (11-82)||(45167299-45167370)
chr3 (12-82)||(38492052-38492122)
chr3 (11-73)||(51062399-51062461)
chr3 (11-77)||(51392482-51392548)
chr3 (17-82)||(29728294-29728359)
chr3 (11-79)||(10571334-10571402)
chr3 (11-82)||(46483551-46483622)
chr3 (11-82)||(15503025-15503096)
chr3 (11-82)||(27848952-27849023)
chr3 (11-82)||(48707033-48707104)
chr3 (11-82)||(49057856-49057927)
chr3 (11-82)||(53066375-53066445)
chr3 (11-82)||(25097377-25097448)
chr3 (11-82)||(28690516-28690587)
chr3 (11-82)||(32951326-32951397)
chr3 (11-82)||(3547610-3547681)
chr3 (11-60)||(9145524-9145573)
chr3 (17-82)||(39435231-39435296)
chr3 (11-71)||(32285366-32285426)
chr3 (47-82)||(7459820-7459855)
chr3 (47-82)||(8559005-8559040)
chr3 (47-82)||(10435345-10435380)
chr3 (11-82)||(17052864-17052935)
chr3 (47-82)||(18659278-18659313)
chr3 (47-82)||(34827479-34827514)
chr3 (11-54)||(45093748-45093791)
chr3 (12-82)||(4238811-4238881)
chr3 (17-54)||(35718051-35718088)
chr3 (50-82)||(37833129-37833161)
[»] scaffold0459 (1 HSPs)
scaffold0459 (11-82)||(12752-12823)
[»] scaffold0366 (2 HSPs)
scaffold0366 (11-82)||(10393-10464)
scaffold0366 (11-82)||(14059-14130)
[»] scaffold0007 (2 HSPs)
scaffold0007 (16-82)||(15411-15477)
scaffold0007 (47-82)||(15216-15251)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 46318008 - 46317844
Alignment:
Q  97 aaataatacaactatcttctgtattaagtcaagcgcgtggggtcgatagcttcttttgnnnnnnnaggacaatatgcattgtgctcctaacaggtat--- 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||||||||| ||||       
T  46318008 aaataatacaactatcttctgtattaagtcaagcgcgtggggtcaatagcttcttttgtttttttaggacaatatgcattgtgctcctaacatgtatgta 46317909  T
Q  194 -accatactatagaaatctacttatgtcattttcatggttgccttggtacaacaactaatctatg 257  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46317908 taccatactatagaaatctacttatgtcattttcatggttgccttggtacaacaactaatctatg 46317844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36819767 - 36819696
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36819767 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 36819696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 32619138 - 32619203
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32619138 taaaacatatgcattgatatgtgtgtcagagtcaactaagtcatttatttagggacggagggagta 32619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 2400356 - 2400285
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2400356 caaagataaaacatatgcattggtatatgtgtcagagtcaactaggtcatttatttagggacggagggagta 2400285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 19072840 - 19072769
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19072840 caaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagta 19072769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 28185598 - 28185669
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28185598 caaagataaaacatatgtattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 28185669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 42086828 - 42086899
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42086828 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 42086899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 47081051 - 47080980
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47081051 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcattcatttagggacggagggagta 47080980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 47713692 - 47713763
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47713692 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 47713775 - 47713840
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47713775 taaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 47713840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 23474159 - 23474230
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23474159 caaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcacttatttagggacggaaggagta 23474230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 31466548 - 31466619
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||    
T  31466548 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 31466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 37951135 - 37951206
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  37951135 caaagataaaacatatgcattggtatgtgcgtcagagtcaactaggtcatttatttatggacggagggagta 37951206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 44479910 - 44479981
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  44479910 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggaggaagta 44479981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 31110693 - 31110625
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagt 81  Q
    ||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  31110693 caaagataaaacatatgcattgagatgtgt--cagagtcaactaggtcatttatttagggacggagggagt 31110625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 36859398 - 36859469
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  36859398 caaagataaaacatatgcattggtatgtgtgttagagtcaattaggtcatttatttaggaacggagggagta 36859469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36905597 - 36905526
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  36905597 caaagataaaacatatgtattggtatgtgtgtcagagtcaactaaatcatttatttagggacggagggagta 36905526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4612283 - 4612348
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  4612283 taaaatatatgcattggtatttgtgtcagagtcaactgggtcatttatttagggacgtagggagta 4612348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 42834482 - 42834553
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| ||||| ||||||| ||| |||||| |||||||||||||||| |||||||||||||    
T  42834482 caaagataaaacatatacattggtatgtgtatcaaagtcaaataggtcatttatttagagacggagggagta 42834553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4033361 - 4033297
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggag 76  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||| || | ||||||||||    
T  4033361 aaagataaaaaatatgcattgatatgtgtgtcagagtcaactagatcatctaataagggacggag 4033297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 21392089 - 21392018
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||| |||| |||| | |||| |||||||||    
T  21392089 caaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcatctattgaaggacagagggagta 21392018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 38198551 - 38198503
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    |||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  38198551 aaagataaaaaatatgcattgatatgtgtatcagagtcaactaggtcat 38198503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 10464305 - 10464376
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||| |||||||||  ||||||| |  |||||||||||||||    
T  10464305 caaagataaaacatatgcattggtacgtgtgtcaaagtcaactatatcatttaatatgggacggagggagta 10464376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 34478201 - 34478272
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||||| ||||| |  |||||||||||||||    
T  34478201 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggttatttaatatgggacggagggagta 34478272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 37231754 - 37231825
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  |||||||||||||||    
T  37231754 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 37231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 48531393 - 48531326
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggg 78  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||  |||| |||| ||| ||||||||    
T  48531393 caaagataaaatatatgcattgatacgtgtgtcagagtcaactaaatcatctattgaggaacggaggg 48531326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 33613286 - 33613238
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    |||| |||||||||||||||| |||| ||||| ||||||||||||||||    
T  33613286 aaagttaaaacatatgcattggtatgcgtgtcggagtcaactaggtcat 33613238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 10464150 - 10464115
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10464150 gtcaactaggtcatttattgagggacggagggagta 10464115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 31466393 - 31466358
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31466393 gtcaactaggtcatttattaagggacggagggagta 31466358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 34478043 - 34478008
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34478043 gtcaactaggtcatttattgagggacggagggagta 34478008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 35500937 - 35501008
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  ||| |||||| ||||||| |  |||||||||||||||    
T  35500937 caaagataaaacatatgcattggtacgtgtgtcgaagttaactagatcatttaatatgggacggagggagta 35501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 36643965 - 36644000
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36643965 gtcaactaggtcatttattgagggacggagggagta 36644000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 36819922 - 36819957
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36819922 gtcaactaggtcatttattaagggacggagggagta 36819957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 36905752 - 36905787
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||| ||||||||||||||||||||||||||||    
T  36905752 gtcaactgggtcatttatttagggacggagggagta 36905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 37950980 - 37950945
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37950980 gtcaactaggtcatttattaagggacggagggagta 37950945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 47081206 - 47081241
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47081206 gtcaactaggtcatttattaagggacggagggagta 47081241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 40348480 - 40348410
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||| ||||||||||||||| ||||| |||||||||| || || || |  |||||||||||||||    
T  40348480 aaagataaaaaatatgcattgatatgagtgtctgagtcaactacgttatctaatatgggacggagggagta 40348410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 42493821 - 42493891
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||| |||| |||||||||||||| |||||||||||  |||||||| |  ||||| |||||||||    
T  42493821 aaagataaaaaatatacattgatatgtgtgacagagtcaactgtgtcatttaatatgggacagagggagta 42493891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29627339 - 29627268
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29627339 caaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 29627268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 23988650 - 23988579
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23988650 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 23988579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 35448187 - 35448258
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35448187 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 35448258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32334830 - 32334901
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32334830 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacagagggagta 32334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 38698034 - 38697963
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38698034 caaagataaaacatatgcattggtatgtgtgtcagagtcaattaggtcatttatttagggacggagggagta 38697963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40512870 - 40512941
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40512870 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 40512941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 42148378 - 42148307
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42148378 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 42148307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 5364491 - 5364421
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagt 81  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5364491 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagt 5364421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 39894852 - 39894781
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  39894852 caaagataaaacatatgcattggtatgtatgtcagagtcaactagatcacttatttagggacggagggagta 39894781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 5213113 - 5213183
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  5213113 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 5213183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4925028 - 4925099
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||| |||||||||||||| |||| ||||||||||||||||    
T  4925028 caaagataaaacatatgcattggtacgtgtgtcagggtcaactaggtcatctattgagggacggagggagta 4925099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32002204 - 32002275
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||    
T  32002204 caaagataaaacatatgcattggtatgtatgtcagagtcaagtagatcatttatttaaggacggagggagta 32002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 35290357 - 35290286
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| |||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||    
T  35290357 caaagataaaatatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 35290286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 37516215 - 37516144
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  37516215 caaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcatctattgagggacggagggagta 37516144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 37843771 - 37843836
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| || |||||||||||||||||||||||| |||| ||||||| || |||||    
T  37843771 taaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacgaagagagta 37843836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 16954749 - 16954690
Alignment:
Q  23 atatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||| || |||||||||||||||||| ||||| |||| ||||||||||||||||    
T  16954749 atatgcattggtacgtgtgtcagagtcaactaagtcatctattgagggacggagggagta 16954690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 39036481 - 39036410
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| ||||| || |||||||||||||||||| ||||| |||| || |||||||||||||    
T  39036481 caaagataaaacatatacattggtacgtgtgtcagagtcaactatgtcatctattgagagacggagggagta 39036410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 41411348 - 41411419
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  ||||||||| ||||| |||| ||||||||||||||||    
T  41411348 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactaagtcatctattgagggacggagggagta 41411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 30779936 - 30780006
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||||||||| |||| || ||||||| |||||||||||||||| |||| ||| ||||||||||||    
T  30779936 aaagataaaacatatgtattggtacgtgtgtcggagtcaactaggtcatctattgaggaacggagggagta 30780006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 14475424 - 14475488
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacgga 75  Q
    ||||| |||||||||||||||  || ||||||| |||||||||||||||| |||| |||||||||    
T  14475424 caaagataaaacatatgcatttgtacgtgtgtcggagtcaactaggtcatctattaagggacgga 14475488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 43517250 - 43517314
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacgga 75  Q
    ||||| |||||||||||||||  || |||||||||||||||||||||||| |||| |||| ||||    
T  43517250 caaagataaaacatatgcattagtacgtgtgtcagagtcaactaggtcatctattgaggggcgga 43517314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 1830725 - 1830654
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||  ||||||  ||||||||| ||||| |||| ||||||||||||||||    
T  1830725 caaagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatctattgagggacggagggagta 1830654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 40316192 - 40316121
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||  ||||||  ||||||||| ||||| |||| ||||||||||||||||    
T  40316192 caaagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatctattgagggacggagggagta 40316121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 37304361 - 37304406
Alignment:
Q  37 gtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  37304361 gtgtatcagagtcaactaggtcacttattcagggacggagggagta 37304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 970209 - 970138
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  | |||||||||||||    
T  970209 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgagacggagggagta 970138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 970364 - 970399
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  970364 gtcaactaggtcatttattgagggacggagggagta 970399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 4299868 - 4299833
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4299868 gtcaactaggtcatttattgagggacggagggagta 4299833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 22613744 - 22613709
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22613744 gtcaactaggtcatttattgagggacggagggagta 22613709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 29627494 - 29627529
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29627494 gtcaactgggtcatttatttagggacggagggagta 29627529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 35448032 - 35447997
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35448032 gtcaactaggtcatttattaagggacggagggagta 35447997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 42148533 - 42148568
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42148533 gtcaactaggtcatttattaagggacggagggagta 42148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 43067300 - 43067229
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  |||||||||| ||||    
T  43067300 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggaggaagta 43067229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 19868872 - 19868918
Alignment:
Q  8 tagcaaaggtaaaacatatgcattgatatgtgtgtcagagtcaacta 54  Q
    |||||||| |||||||||||||||| || ||||||| ||||||||||    
T  19868872 tagcaaagataaaacatatgcattggtacgtgtgtcggagtcaacta 19868918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 39405834 - 39405764
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| || |||| ||  |||||||||| ||||||| |  |||||||||||||||    
T  39405834 aaagataaaacatatgcattggtacgtgtctcgaagtcaactagatcatttaatatgggacggagggagta 39405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 21961297 - 21961256
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaact 53  Q
    |||| ||||||||||| ||||||||||||| |||||||||||    
T  21961297 aaagataaaacatatgaattgatatgtgtgacagagtcaact 21961256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 4300022 - 4300074
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcattta 63  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| |||||||    
T  4300022 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcattta 4300074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 22613899 - 22613951
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcattta 63  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| |||||||    
T  22613899 caaagataaaacatatgcattggtacgtgtgtctaagtcaactagatcattta 22613951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25946294 - 25946358
Alignment:
Q  18 aaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||| ||||||||| |||| |||||||||||| |||| ||| |  |||||||||||||||    
T  25946294 aaaatatatacattgatatatgtgacagagtcaactatgtcacttaatatgggacggagggagta 25946358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 18718310 - 18718239
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18718310 caaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 18718239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 14372148 - 14372077
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14372148 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 14372077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 23671447 - 23671376
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23671447 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 23671376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 14707724 - 14707792
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 79  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14707724 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 14707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 27559646 - 27559575
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27559646 caaagataaaacatatacattgatatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 27559575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 34826983 - 34826912
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34826983 caaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 34826912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 40425439 - 40425510
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40425439 caaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttatttagggacggagggagta 40425510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 41172947 - 41173018
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41172947 caaagataaaacatatgcattggtatgtgtgtcagagtcaagtaggtcatttatttagggacggagggagta 41173018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 42038594 - 42038523
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42038594 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 42038523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3987422 - 3987493
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3987422 caaagataaaacatatgtattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 3987493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4045423 - 4045494
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  4045423 caaagataaaacatatgcattggtatgtgtgtcagagtcaaccaaatcatttatttagggacggagggagta 4045494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7443081 - 7443152
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7443081 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 7443152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 16942001 - 16942072
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  16942001 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 16942072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 17012666 - 17012737
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  17012666 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagcgacggaggaagta 17012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 20517490 - 20517419
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||| || ||||||||||||| |||||||||||||    
T  20517490 caaagataaaacatatgcattggtatgtgtgtcagagtcaattatgtcatttatttagagacggagggagta 20517419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 44283469 - 44283540
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  44283469 caaagataaaatatatgcattggtatgtgtgtcagaatcaactaggtcatttatttaaggacggagggagta 44283540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 44330455 - 44330384
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  44330455 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagta 44330384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 41463707 - 41463777
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagt 81  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||    
T  41463707 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatttattgagggacggagggagt 41463777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 38588079 - 38588143
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacgga 75  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  38588079 caaagataaaacatatgcattggtatgtgtatcagagtcaactagatcatttatttagggacgga 38588143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 9877273 - 9877344
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||| | | |||||||||||||||||||||||| |||| ||||||||||||||||    
T  9877273 caaagataaaacatatgcattcacacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 9877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 30708799 - 30708728
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||| |||||||||||||| ||||| || |||||||||||||    
T  30708799 caaagataaaacatatgcattggtacgtgtgtcaaagtcaactaggtcacttattcagagacggagggagta 30708728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32776090 - 32776161
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||| || |||||||||||||||| |||| ||||||||||||||||    
T  32776090 caaagataaaacatatgcattggtacgtgtatcggagtcaactaggtcatctattaagggacggagggagta 32776161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 36199141 - 36199197
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttattta 67  Q
    ||||| |||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  36199141 caaagataaaacatatgcattagtatgtgtgtcagagtcaactagatcatttattta 36199197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 4083277 - 4083229
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  4083277 aaagataaaacatatgcattgatatgtgtgtcggagtcaactagctcat 4083229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 5030462 - 5030525
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacgga 75  Q
    |||| ||||| |||||||||| ||||||||||| ||||||||||||||| |||| | |||||||    
T  5030462 aaagataaaaaatatgcattggtatgtgtgtcaaagtcaactaggtcatctattaacggacgga 5030525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 38963590 - 38963519
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  ||| ||||||||||| |||| ||| ||||||||||||    
T  38963590 caaagataaaacatatgcattggtacgtgtgtcgaagttaactaggtcatctattaaggaacggagggagta 38963519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 40598199 - 40598128
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  |||||||||||||||    
T  40598199 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 40598128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 14707570 - 14707535
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  14707570 gtcaactaggtcatttattaagggacggagggagta 14707535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 18718465 - 18718500
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18718465 gtcaactaggtcatttattaagggacggagggagta 18718500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 23671602 - 23671637
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23671602 gtcaactaggtcatttattaagggacggagggagta 23671637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 40425284 - 40425249
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  40425284 gtcaactaggtcatttattaagggacggagggagta 40425249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 20917763 - 20917729
Alignment:
Q  48 tcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||||| ||||||||||||||||    
T  20917763 tcaactaggtcatttattaagggacggagggagta 20917729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 44283314 - 44283281
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggag 80  Q
    ||||||||||||||||||| ||||||||||||||    
T  44283314 gtcaactaggtcatttattaagggacggagggag 44283281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 22883068 - 22883012
Alignment:
Q  26 tgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||| |||||||||| ||| ||| | |||| |||||| |||||||||||||||    
T  22883068 tgcattgacatgtgtgtcatagttaacaatgtcacttattttgggacggagggagta 22883012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29791013 - 29790942
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29791013 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 29790942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 38845271 - 38845200
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38845271 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 38845200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 30289995 - 30289924
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30289995 caaagataaaacatatgcattggtatgtatgtcagagtcaactaggtcatttatttagggacggagggagta 30289924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 40013722 - 40013651
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40013722 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattaagggacggagggagta 40013651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 43066198 - 43066127
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43066198 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggtagta 43066127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 45081883 - 45081812
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45081883 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 45081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 38739727 - 38739657
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38739727 aaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggagta 38739657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 1580955 - 1581026
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1580955 caaagataaaatatatgcattgatacgtgtgtcagagtcaactaggtcatttattcagggacggagggagta 1581026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 2805666 - 2805737
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  2805666 caaagataaaacatatgcattggtatgtatgtcagagtcaactgggtcatttatttagggacggagggagta 2805737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3293292 - 3293363
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  3293292 caaagataaaacatatgcattggtatatgtgtcagagtcaactagatcatttatttagggacggagggagta 3293363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 37709970 - 37709899
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37709970 caaagataaaacatatacattggtatgtgtgttagagtcaactaggtcatttatttagggacggagggagta 37709899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 6470916 - 6470845
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||    
T  6470916 caaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcatatattgagggacggtgggagta 6470845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 13138322 - 13138393
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |||||||||    
T  13138322 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatttattgagggacagagggagta 13138393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 30380601 - 30380530
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||    
T  30380601 caaagataaaacatatgcattggtatgtgtgtcagagtcaattagatcacttatttagggacggagggagta 30380530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 2986404 - 2986339
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||    
T  2986404 taaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttattcagagacggagggagta 2986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 23248848 - 23248779
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggag 80  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||||||||    
T  23248848 caaagataaaacatatgcattgatatatgtgttagagtcaactaggtcatttatttaaggagggagggag 23248779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 8351070 - 8351141
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||| || || ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  8351070 caaagataaaacatatgcactggtacgtgtgtcagagtcaactagatcacttatttagggacggagggagta 8351141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 39361190 - 39361128
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| |||||||||||||||   |||| ||||||||||||| |||||| |||||    
T  39361190 taaaacatatgcattggtatgtgtgtcagagt---ctagatcatttatttaggaacggagagagta 39361128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 44123744 - 44123673
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||| |||| || |  ||||||||| |||||    
T  44123744 caaagataaaacatatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 44123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 2805511 - 2805476
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2805511 gtcaactaggtcatttattaagggacggagggagta 2805476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 12893602 - 12893559
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaacta 54  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||    
T  12893602 caaagataaaacatatgcattgatacgtgtgtcggagtcaacta 12893559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 14522451 - 14522380
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| |||||| | | |||||||| |||| |||| ||||| | ||||||||    
T  14522451 caaagataaaacatatgcattgatacgtgtgttaaaatcaactagatcatctattgagggatgaagggagta 14522380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 14847281 - 14847210
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |  ||||||| || ||||||||||||| |||  ||||||| ||||||||    
T  14847281 caaagataaaacatatgcattggtgcgtgtgtcggaatcaactaggtcatctatcgagggacgtagggagta 14847210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 18809502 - 18809537
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18809502 gtcaactaggtcatttattgagggacggagggagta 18809537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 23249078 - 23249113
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23249078 gtcaactaggtcatttattaagggacggagggagta 23249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 30290150 - 30290185
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30290150 gtcaactaggtcatttattaagggacggagggagta 30290185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 31127840 - 31127805
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  31127840 gtcaactaggtcatttattgagggacggagggagta 31127805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 45082038 - 45082073
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45082038 gtcaactaggtcatttattaagggacggagggagta 45082073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 45253815 - 45253749
Alignment:
Q  17 taaaacatatgcattgatatgtgt-gtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| || |||| ||| ||||||||||| |||| |||| |||||| |||||||||    
T  45253815 taaaacatatgcattggtacgtgtcgtcggagtcaactagatcatctattaagggacagagggagta 45253749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 886257 - 886306
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| |||||||||||||||| || ||||||| |||||||| |||||||    
T  886257 caaagataaaacatatgcattggtacgtgtgtcggagtcaaccaggtcat 886306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 29708785 - 29708822
Alignment:
Q  45 gagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  29708785 gagtcaactaggtcacttattaagggacggagggagta 29708822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 643621 - 643692
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  643621 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 643692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 11114636 - 11114565
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  11114636 caaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggagggagta 11114565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 31854889 - 31854818
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  31854889 caaagataaaacatatgcattggtatgtgtatcagagtcaactgggtcatttatttagggacggagggagta 31854818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 22020347 - 22020276
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  22020347 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggaaggagta 22020276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 24150812 - 24150741
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  24150812 caaagataaaatatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaggaacggatggagta 24150741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 18991969 - 18991904
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  18991969 taaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 18991904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 30237229 - 30237165
Alignment:
Q  18 aaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||    
T  30237229 aaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 30237165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 8796121 - 8796050
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  8796121 caaagataaaacatatacattggtatgtgtgtcagagtcaactagatgatttatttagggacggagtgagta 8796050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 33121613 - 33121542
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||||||||||||| ||||||||||||||||    
T  33121613 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttattaagggacggagggagta 33121542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 20662250 - 20662321
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttattt-agggacggagggagta 82  Q
    |||| |||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||| ||||    
T  20662250 aaagataaaacatatgcattggtatgtatgtcagaggcaactaggtcatttatttgagggacggaggaagta 20662321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 25435482 - 25435412
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||| ||| ||||||||||||    
T  25435482 caaagataaaacatatgcattggtatgtgtgtca-agtcaactagatcatttattgaggaacggagggagta 25435412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 29403715 - 29403644
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||| | |||||||| |||||    
T  29403715 caaagataaaacatacgcattggtatgtgtgtcagagtcaactaagtcatttattaaaggacggagagagta 29403644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7098063 - 7098130
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||    ||||||||||||||||||||    
T  7098063 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatc----atttagggacggagggagta 7098130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 29986348 - 29986394
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggt 57  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  29986348 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggt 29986394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 13207143 - 13207192
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  13207143 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcat 13207192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 20662094 - 20662059
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  20662094 gtcaactaggtcatttattaagggacggagggagta 20662059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 29979059 - 29979024
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29979059 gtcaactaggtcatttattaagggacggagggagta 29979024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3901329 - 3901400
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3901329 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 3901400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 5744273 - 5744344
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5744273 caaagataaaacatatacattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 5744344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 46212540 - 46212611
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46212540 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 46212611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 46803702 - 46803631
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46803702 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 46803631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 6494658 - 6494588
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6494658 aaagataaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagta 6494588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3442534 - 3442605
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3442534 caaagataaaacatatgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagta 3442605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 4264205 - 4264134
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4264205 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagta 4264134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 5735342 - 5735271
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5735342 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 5735271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 28166345 - 28166274
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28166345 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 28166274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 45198530 - 45198601
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45198530 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 45198601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 47579358 - 47579287
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47579358 caaagataaaacatatgcattggtatgtgtgtaagagtcaactaggtcatttatttagggacggagggagta 47579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7739009 - 7739080
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  7739009 caaagataaaacatatgcattgatacgtgtgtcggagtcaactaggtcatttatttagggacggatggagta 7739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 21859109 - 21859180
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21859109 caaagataaaacatatgtattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21859180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 21914972 - 21915043
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21914972 caaagataaaacatatgtattggtatgtgtgtcagagtcaactaggttatttatttagggacggagggagta 21915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 26205894 - 26205965
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  26205894 caaagataaaacatatgcattggtatgtgtgtaagagtcaactagatcatttatttagggacggagggagta 26205965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 28152056 - 28151993
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggag 80  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  28152056 taaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaaggacggagggag 28151993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 39786546 - 39786617
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||    
T  39786546 caaagataaaacatatgcattgatacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 39786617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 49768516 - 49768447
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggag 80  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  49768516 caaagataaaacatatgcattgatatgtatgtcatagtcaactaagtcatttatttagggacggagggag 49768447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 20678777 - 20678843
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagg 77  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20678777 caaagataaaatatatgcattgatatatgtgtcagagtcaactagatcatttatttagggacggagg 20678843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 37688223 - 37688289
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagg 77  Q
    ||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  37688223 caaagataaaacatatgcattggtatgtgtgtcagagtcatctagatcatttatttagggacggagg 37688289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 18360163 - 18360234
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||| |||||||||||||||||||| |||| ||||||||||||||||    
T  18360163 caaagataaaacatatgcattggtacgtgcgtcagagtcaactaggtcatctattgagggacggagggagta 18360234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36602765 - 36602694
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||| |||||||||||||||||||| |||| ||||||||||||||||    
T  36602765 caaagataaaacatatgcattggtacgtgcgtcagagtcaactaggtcatctattgagggacggagggagta 36602694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 55190904 - 55190975
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||||| ||||    
T  55190904 caaagataaaacatatgcattggtaagtgtgtcagagtcaactaggtcatctattgagggacggaggaagta 55190975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 39195672 - 39195742
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||||    
T  39195672 aaagataaaaaatatgcattgatatgtgtgtcagagtcaactaggtcatctaataagggacgaagggagta 39195742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 23256000 - 23255935
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||| || |||||||||||||||||||||||| |||| ||||||||||||||||    
T  23256000 taaaatatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggagggagta 23255935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 4209434 - 4209363
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  4209434 caaagataaaacatatgtattggtacgtgtgtcagagtcaactagatcatctattgagggacggagggagta 4209363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 5123347 - 5123418
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  5123347 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaagtcatctattgagggatggagggagta 5123418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 1377103 - 1377032
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||| | ||| | ||||||||    
T  1377103 caaagataaaacatatgcattggtatgtgtgtcatagtcaactacgtcatttattgaaggatgaagggagta 1377032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 53568425 - 53568374
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcattt 62  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  53568425 caaagataaaacatatgcattgatatgtgtgtcggagtcaactaggacattt 53568374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19525904 - 19525975
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||||||||||| |   ||||||||||||||    
T  19525904 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttaatataggacggagggagta 19525975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19634038 - 19634109
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| || ||||||| ||||||||||| |||| |||| ||||||| ||||||||    
T  19634038 caaagataaaacatatgaattggtacgtgtgtcggagtcaactagatcatctattaagggacgaagggagta 19634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50035610 - 50035539
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||| |||| || |  ||||||||| |||||    
T  50035610 caaagataaaacatatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 50035539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 14958067 - 14958030
Alignment:
Q  23 atatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    |||||||||| |||||||||||||||||||||||||||    
T  14958067 atatgcattggtatgtgtgtcagagtcaactaggtcat 14958030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 19731355 - 19731404
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  19731355 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 19731404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 3442379 - 3442344
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3442379 gtcaactaggtcatttattaagggacggagggagta 3442344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 5735497 - 5735532
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  5735497 gtcaactaggtcatttattaagggacggagggagta 5735532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 7738854 - 7738819
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7738854 gtcaactaggtcatttattaagggacggagggagta 7738819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 19652445 - 19652516
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| |||| || || |||| ||||||||||| |||| |||| ||||||||||| ||||    
T  19652445 caaagataaaacatatgaattggtacgtatgtcggagtcaactagatcatatattgagggacggaggaagta 19652516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 25644430 - 25644359
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  ||||| |||||||||    
T  25644430 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacagagggagta 25644359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 28152217 - 28152252
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28152217 gtcaactaggtcatttattaagggacggagggagta 28152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 45198375 - 45198340
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45198375 gtcaactaggtcatttattaagggacggagggagta 45198340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 47579512 - 47579547
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47579512 gtcaactaggtcatttattaagggacggagggagta 47579547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50033091 - 50033020
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||| |||||||||| ||||| || |  ||||||||| |||||    
T  50033091 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaagtcatctaatatgggacggagagagta 50033020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 19170730 - 19170800
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||| |||||||||| ||  ||||||  ||||||||||||||| |||| |||||||||| |||||    
T  19170730 aaagataaaatatatgcattggtacatgtgtcgaagtcaactaggtcatctattgagggacggagcgagta 19170800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 26659911 - 26659862
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| ||||||||||||| |||||  |||||| ||||||||||||||||    
T  26659911 caaagctaaaacatatgcagtgatacatgtgtcggagtcaactaggtcat 26659862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 39193982 - 39193941
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaact 53  Q
    |||| ||||| |||||||||||||| ||||||||||||||||    
T  39193982 aaagataaaagatatgcattgatatatgtgtcagagtcaact 39193941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 6923130 - 6923182
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcattta 63  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| |||||||    
T  6923130 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcattta 6923182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 19170567 - 19170539
Alignment:
Q  54 aggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||||||||||||||||    
T  19170567 aggtcatttatttagggacggagggagta 19170539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 19525749 - 19525717
Alignment:
Q  47 gtcaactaggtcatttatttagggacggaggga 79  Q
    ||||||||||||||||||| |||||||||||||    
T  19525749 gtcaactaggtcatttattgagggacggaggga 19525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 25531849 - 25531778
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25531849 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 25531778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 48219832 - 48219903
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48219832 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 48219903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 48265002 - 48265072
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48265002 aaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 48265072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32988539 - 32988610
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32988539 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagagacggagggagta 32988610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 39354454 - 39354525
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39354454 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacgtagggagta 39354525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50539331 - 50539260
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50539331 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 50539260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 52379060 - 52378989
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52379060 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 52378989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50876435 - 50876364
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  50876435 caaagataaaacatatgcattggtatatgtgttagagtcaactaggtcatttatttagggacggagggagta 50876364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 49805442 - 49805512
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagt 81  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49805442 caaagataaaacatatgcattggtatgtttgtcagagtcaactagatcatttatttagggacggagggagt 49805512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 38458800 - 38458729
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| ||||    
T  38458800 caaagataaaacatatgcattggtatgtgtgtcagaatcaactaggtcatttattgagggacggaggaagta 38458729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30529246 - 30529311
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  30529246 taaaacatatgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagta 30529311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3529247 - 3529176
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  3529247 caaagataaaacatatgcattggtacgtgtgtcagagtcaactagatcattaattaagggacggagggagta 3529176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 23569864 - 23569935
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||||| ||||||||||||||||    
T  23569864 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttattgagggacggagggagta 23569935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 42708569 - 42708504
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||| | ||||| ||||||    
T  42708569 taaaacatatgcattggtatgtgtgtcagagtcaactaaatcatttatttaagaacggaaggagta 42708504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32565810 - 32565746
Alignment:
Q  18 aaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||| || |||||||||||||||||| ||||| |||| | ||||||||||||||    
T  32565810 aaaacatatgcattggtacgtgtgtcagagtcaactaagtcatctattgaaggacggagggagta 32565746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 45235035 - 45235101
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagg 77  Q
    ||||| |||||||||||||||| || |||||||||||||||||| |||| ||||| || ||||||||    
T  45235035 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaagtcacttattcagagacggagg 45235101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 29161913 - 29161853
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttaggga 71  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||| ||||||||| |||||    
T  29161913 caaagataaaacatatgaattggtacgtgtgtcagagtcaactagatcatttattgaggga 29161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 47222285 - 47222233
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcattta 63  Q
    ||||| |||||||||||||||| || ||||||| |||||||||||||||||||    
T  47222285 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcattta 47222233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 4605069 - 4605002
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggg 78  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||| |||| |||  ||||||||||||    
T  4605069 caaagataaaacatatgcattggtacgtgtgtcggagtcaactagatcatctatcgagggacggaggg 4605002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 16751643 - 16751714
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||| |||||||||||||||| || |  || ||||||||||||    
T  16751643 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatctaatatggaacggagggagta 16751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 37281162 - 37281092
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||||| |||||||  ||||| ||||||||||||||||||||| |||| ||||||  ||||||||    
T  37281162 aaagataaaacacatgcatttgtatgtttgtcagagtcaactaggtcatctattgagggacaaagggagta 37281092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 38738168 - 38738217
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  38738168 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 38738217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 1849770 - 1849714
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttattta 67  Q
    ||||| |||||||||||||||| ||| ||||| |||||||||||| ||| |||||||    
T  1849770 caaagataaaacatatgcattggtatatgtgttagagtcaactagatcacttattta 1849714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 16266233 - 16266165
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 79  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  ||||||||||||    
T  16266233 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggaggga 16266165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 3898606 - 3898571
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  3898606 gtcaactaggtcatttattgagggacggagggagta 3898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3898761 - 3898832
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || || ||||  |||||||||| ||||||| |  |||||||||||||||    
T  3898761 caaagataaaacatatgcattggtacgtctgtcgaagtcaactagatcatttaatatgggacggagggagta 3898832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 16265104 - 16265033
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  | |||||||||||||    
T  16265104 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgagacggagggagta 16265033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 16265259 - 16265294
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16265259 gtcaactaggtcatttattgagggacggagggagta 16265294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 16266388 - 16266423
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16266388 gtcaactaggtcatttattgagggacggagggagta 16266423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 25532004 - 25532039
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25532004 gtcaactaggtcatttattaagggacggagggagta 25532039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 26441708 - 26441637
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  || ||||||||||||    
T  26441708 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatggaacggagggagta 26441637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 26441860 - 26441895
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26441860 gtcaactaggtcatttattgagggacggagggagta 26441895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 30529085 - 30529050
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30529085 gtcaactaggtcatttattaagggacggagggagta 30529050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 31698790 - 31698821
Alignment:
Q  23 atatgcattgatatgtgtgtcagagtcaacta 54  Q
    ||||||||||||||||||||||||||||||||    
T  31698790 atatgcattgatatgtgtgtcagagtcaacta 31698821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 39354299 - 39354264
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  39354299 gtcaactaggtcatttattaagggacggagggagta 39354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 43680140 - 43680069
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || | |||||  |||||||||| ||||||| |  |||||||||||||||    
T  43680140 caaagataaaacatatgcattggtacgcgtgtcgaagtcaactagatcatttaatatgggacggagggagta 43680069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 43680296 - 43680331
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  43680296 gtcaactaggtcatttattgagggacggagggagta 43680331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 48264846 - 48264811
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  48264846 gtcaactaggtcatttattaagggacggagggagta 48264811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 48376229 - 48376158
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||| ||| ||||||||||| |||| | | || |||||||||    
T  48376229 caaagataaaacatatgcattggtacgtgtgtcaaagttaactaggtcatctattgaagaacagagggagta 48376158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 50481349 - 50481278
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||| || ||||||| ||||| || |  |||||||||||||||    
T  50481349 caaagataaaacatatgcattggtacgtgtgtcggaatcaactaagtcatctaatatgggacggagggagta 50481278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 50876590 - 50876625
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  50876590 gtcaactaggtcatttattaagggacggagggagta 50876625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 14075800 - 14075738
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 79  Q
    |||||||||||||||| |||||||||| ||||||||| | |||| || |  ||||||||||||    
T  14075800 taaaacatatgcattggtatgtgtgtcggagtcaactcgatcatctaatatgggacggaggga 14075738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 23391321 - 23391279
Alignment:
Q  18 aaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    |||| |||||||||||||||||| ||| |||||||||||||||    
T  23391321 aaaaaatatgcattgatatgtgtatcatagtcaactaggtcat 23391279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 31971577 - 31971631
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatt 65  Q
    ||||| |||||||||||||||| ||  |||||||||||||||||| |||| ||||    
T  31971577 caaagataaaacatatgcattggtacatgtgtcagagtcaactagatcatctatt 31971631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 24982416 - 24982351
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| || |||||||  |||||||||| ||||||| |  | |||||||||||||    
T  24982416 taaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgagacggagggagta 24982351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 23569702 - 23569674
Alignment:
Q  54 aggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||||||||||||||||    
T  23569702 aggtcatttatttagggacggagggagta 23569674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 117391 - 117321
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  117391 aaagataaaacatatgcattgatatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 117321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 117547 - 117579
Alignment:
Q  47 gtcaactaggtcatttatttagggacggaggga 79  Q
    ||||||||||||||||||| |||||||||||||    
T  117547 gtcaactaggtcatttattaagggacggaggga 117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 44298 - 44369
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44298 caaagataaaacatatgcattggtatgcgtgtcagagtcaactaggtcatttatttagggacggagggagta 44369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 41407 - 41478
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41407 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttattgagggacggagggagta 41478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 7460010 - 7460081
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7460010 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggaggaagta 7460081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 18659123 - 18659052
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18659123 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 18659052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 43137922 - 43137851
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43137922 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttatttagggacggagggagta 43137851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 52668675 - 52668746
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52668675 caaagataaaatatatgcattgatatgtgtgtcagagccaactaggtcatttatttagggacggagggagta 52668746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 54840318 - 54840389
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  54840318 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggatggagggagta 54840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 8559196 - 8559266
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8559196 aaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttagggacggatggagta 8559266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 37832965 - 37832900
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37832965 taaaacatatgcattggtatgtgtgtcagagtcaactatgtcatttatttagggacggagggagta 37832900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 21907067 - 21906996
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  21907067 caaagataaaacatatgcattggtatgtgtgtcagagtcaactagatcatttattgagggacggagggagta 21906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 38833735 - 38833671
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacgga 75  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  38833735 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacgga 38833671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 1327382 - 1327311
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  1327382 caaagataaaacatatgcattggtatgtatgtaagagtcaactagatcatttatttagggacggagggagta 1327311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 34827393 - 34827322
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  34827393 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 34827322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 45167370 - 45167299
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  45167370 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcatttatttaagaacggatggagta 45167299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 38492122 - 38492052
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  38492122 aaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcacttattcagggacggagggagta 38492052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 51062461 - 51062399
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacg 73  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  51062461 caaagataaaacatatgcattggtatgtgtgtcagagtcaactaggtcacttatttagggacg 51062399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 51392482 - 51392548
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagg 77  Q
    ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  51392482 caaagataaaacatatgcattggtatgtgtgtaagagtcaactaggtcatttatttagggacagagg 51392548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 29728294 - 29728359
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  29728294 taaaacatatgcattggtacttgtgtcagagtcaactaggtcatttattgagggacggagggagta 29728359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 10571334 - 10571402
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggaggga 79  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  10571334 caaagataaaacatatgtattggtatgtgtgtcagagtcaactaggtcatttatcgagggacggaggga 10571402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 46483622 - 46483551
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  46483622 caaagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctattgagggacggatggagta 46483551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 15503096 - 15503025
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||||||||||| || |||| ||||||| |||||||| |||| ||||||||||||||||    
T  15503096 caaagataaaacatatgcattgatacgtatgtcggagtcaattaggtcatctattgagggacggagggagta 15503025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 27849023 - 27848952
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| ||||| ||||||||||||||| || | ||||||||||||||||    
T  27849023 caaagataaaacatatgcattggtatgtatgtcaaagtcaactaggtcatctaatgagggacggagggagta 27848952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 48707033 - 48707104
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||| ||||||| |||||||  ||| ||||||||||||||||||||||    
T  48707033 caaagataaaacatatgcattggtatgtatgtcagaatcaactaaatcacttatttagggacggagggagta 48707104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 49057927 - 49057856
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||||||||||||| ||||||||||| ||||    
T  49057927 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttattgagggacggaggaagta 49057856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 53066445 - 53066375
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||||||||||||| ||||| |||| ||||||||||||||||    
T  53066445 caaagataaaacatatgcattggtaagtgtgtcagagtcaacta-gtcatctattgagggacggagggagta 53066375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 25097377 - 25097448
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||| ||||||||||| ||||| |||| ||| ||||||||||||    
T  25097377 caaagataaaacatatgcattggtacgtgtgttagagtcaactaagtcatctattgaggtacggagggagta 25097448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 28690587 - 28690516
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||||| || |  | |||||||||||||    
T  28690587 caaagataaaacatatgcattggtatgtgtgtcggagtcaactaggtcatctaatatgtgacggagggagta 28690516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 32951326 - 32951397
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| ||||||||||  |||||||||| ||||||| |  |||||||||||||||    
T  32951326 caaagataaaacatatgcattggtatgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 32951397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 3547610 - 3547681
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || ||||||| ||||||| |||||||| || |  |||||||||||||||    
T  3547610 caaagataaaacatatgcattggtacgtgtgtcggagtcaattaggtcatctaatatgggacggagggagta 3547681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 9145573 - 9145524
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcat 60  Q
    ||||| |||||||||||||||| || ||||||| ||||||||||||||||    
T  9145573 caaagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 9145524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 39435231 - 39435296
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||| |||| ||| ||||||||| ||||||||||||| || | ||||||||||||||||    
T  39435231 taaaaaatatgtattggtatatgtgtcagaatcaactaggtcatctaataagggacggagggagta 39435296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 32285366 - 32285426
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttaggga 71  Q
    ||||| ||||||||||| |||| || |||||||||||||||||||||| | |||| |||||    
T  32285366 caaagataaaacatatgtattggtacgtgtgtcagagtcaactaggtcgtctattgaggga 32285426  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 7459855 - 7459820
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7459855 gtcaactaggtcatttattaagggacggagggagta 7459820  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 8559040 - 8559005
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8559040 gtcaactaggtcatttattaagggacggagggagta 8559005  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 10435345 - 10435380
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  10435345 gtcaactaggtcatttattgagggacggagggagta 10435380  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 17052935 - 17052864
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  | |||||||||||||    
T  17052935 caaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgagacggagggagta 17052864  T

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Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 18659278 - 18659313
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  18659278 gtcaactaggtcatttattaagggacggagggagta 18659313  T

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Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 34827479 - 34827514
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  34827479 gtcaactaggtcatttattaagggacggagggagta 34827514  T

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Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 45093791 - 45093748
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaacta 54  Q
    ||||| |||||||||||||||| || ||||||||||||||||||    
T  45093791 caaagataaaacatatgcattggtacgtgtgtcagagtcaacta 45093748  T

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Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 4238811 - 4238881
Alignment:
Q  12 aaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    |||| |||||||||||||||| || |||||||  |||||||||| ||||||| |  || ||||||||||||    
T  4238811 aaagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatggaacggagggagta 4238881  T

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Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 35718051 - 35718088
Alignment:
Q  17 taaaacatatgcattgatatgtgtgtcagagtcaacta 54  Q
    |||||||||||||||| || ||||||||||||||||||    
T  35718051 taaaacatatgcattggtacgtgtgtcagagtcaacta 35718088  T

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Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 37833129 - 37833161
Alignment:
Q  50 aactaggtcatttatttagggacggagggagta 82  Q
    |||||||||||||||| ||||||||||||||||    
T  37833129 aactaggtcatttattaagggacggagggagta 37833161  T

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Target: scaffold0459 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 12823 - 12752
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12823 caaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 12752  T

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Target: scaffold0366 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 10464 - 10393
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10464 caaagataaaacatatgcattagtatgtgtgtcagagtcaactaggtcacttatttagggacggagggagta 10393  T

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Target: scaffold0366; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 14130 - 14059
Alignment:
Q  11 caaaggtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| |||||||||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||    
T  14130 caaagataaaacatatgcattggtacgtgtatcagagtcaactaggtcacttatttagggacggagggagta 14059  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 15411 - 15477
Alignment:
Q  16 gtaaaacatatgcattgatatgtgtgtcagagtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||| ||||||||||| || |||||| |||||||||||||||| ||||| |||||| |||||||||    
T  15411 gtaaatcatatgcattggtacgtgtgttagagtcaactaggtcagttattcagggaccgagggagta 15477  T

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Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 15251 - 15216
Alignment:
Q  47 gtcaactaggtcatttatttagggacggagggagta 82  Q
    ||||||||||||||||||| ||||||||||||||||    
T  15251 gtcaactaggtcatttattaagggacggagggagta 15216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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