View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_high_24 (Length: 252)

Name: NF18006_high_24
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_high_24
NF18006_high_24
[»] chr5 (1 HSPs)
chr5 (1-245)||(35109922-35110156)
[»] chr2 (1 HSPs)
chr2 (110-193)||(34233600-34233683)
[»] chr1 (2 HSPs)
chr1 (1-43)||(48742011-48742053)
chr1 (111-195)||(41515201-41515285)
[»] chr3 (4 HSPs)
chr3 (4-51)||(55480972-55481019)
chr3 (78-167)||(11265892-11265981)
chr3 (92-197)||(34982070-34982174)
chr3 (110-140)||(14477268-14477298)
[»] chr4 (2 HSPs)
chr4 (114-150)||(13850121-13850157)
chr4 (120-168)||(42451855-42451903)
[»] chr8 (2 HSPs)
chr8 (116-175)||(28009200-28009259)
chr8 (116-175)||(28066503-28066562)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-45)||(82274-82321)
[»] chr7 (2 HSPs)
chr7 (122-171)||(35720294-35720343)
chr7 (142-206)||(9880799-9880863)
[»] chr6 (2 HSPs)
chr6 (122-170)||(5076498-5076546)
chr6 (109-177)||(10378739-10378807)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 35110156 - 35109922
Alignment:
Q  1 aaagattgaatgaaatcggaaggagagagagggaagaagagaacctaactcaggtttgtgtttttcagcgtcacgcgggttgtattttaatgtgacttta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  35110156 aaagattgaatgaa-tcggaaggagagagagggaagaagagaacctaactcatgttggtgtttttcagcgtcacgcgggttgtattttaatgtgacttta 35110058  T
Q  101 gtcacactaggtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaaaacataatgaaagaagagcaatatt 200  Q
    ||||||||||||||||||||||||||         |||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  35110057 gtcacactaggtataacacctgcgtg---------acgcatgaatattttagaaagttcgattgggagtgagcaaaacatgatgggagaagagcaatatt 35109967  T
Q  201 ccaaaactatagggtacacttaattccttataaaatttgatgatg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35109966 ccaaaactatagggtacacttaattccttataaaatttgatgatg 35109922  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 34233600 - 34233683
Alignment:
Q  110 ggtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaaaacataatgaaagaagag 193  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||||| | |||| |||||||||||| | ||| ||||||||    
T  34233600 ggtataacacctgcgtgagttaactcacgcatgagtattttgggaagtttggttggaagtgagcaaaacgtgatggaagaagag 34233683  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48742053 - 48742011
Alignment:
Q  1 aaagattgaatgaaatcggaaggagagagagggaagaagagaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  48742053 aaagattgaatgaaatcggaaggagagagagggaagaagagaa 48742011  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 41515201 - 41515285
Alignment:
Q  111 gtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaaaacataatgaaagaagagca 195  Q
    |||||||||| ||||||||||| ||||||| | ||||||| ||||||| | ||||||| ||||||||  | ||| ||||||||||    
T  41515201 gtataacacccgcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcgagcaaaatgtgatggaagaagagca 41515285  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 55480972 - 55481019
Alignment:
Q  4 gattgaatgaaatcggaaggagagagagggaagaagagaacctaactc 51  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  55480972 gattgaatgaaatcggaaggagagagagggaagaagataaccaaactc 55481019  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 11265892 - 11265981
Alignment:
Q  78 ggttgtattttaatgtgactttagtcacactaggtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattggga 167  Q
    ||||||||| |||  |||||| ||||||| |  ||||||||||||||||| |||||||||| | ||||||||| | ||||| | ||||||    
T  11265892 ggttgtattctaacatgacttaagtcacattgagtataacacctgcgtgacttaagtcacgtaggagtattttgggaagtttggttggga 11265981  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 34982174 - 34982070
Alignment:
Q  92 gtgactttagtcacactaggtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaaaacataatgaaagaag 191  Q
    ||||||| ||||||||| ||||  |||| | |||||||||| ||||| |||||||||||   |||| || |||||| |||||||||| | |||| |||||    
T  34982174 gtgacttaagtcacact-ggtaatacacatacgtgagttaactcacgtatgagtattttgataagtacgcttgggattgagcaaaacgtgatgagagaag 34982076  T
Q  192 agcaat 197  Q
    ||||||    
T  34982075 agcaat 34982070  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 14477268 - 14477298
Alignment:
Q  110 ggtataacacctgcgtgagttaagtcacgca 140  Q
    |||||||||||||||||||||||||||||||    
T  14477268 ggtataacacctgcgtgagttaagtcacgca 14477298  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 13850157 - 13850121
Alignment:
Q  114 taacacctgcgtgagttaagtcacgcatgagtatttt 150  Q
    |||||||||||||||||||||||||||||||||||||    
T  13850157 taacacctgcgtgagttaagtcacgcatgagtatttt 13850121  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 42451903 - 42451855
Alignment:
Q  120 ctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggag 168  Q
    |||||||| ||||||||| |||||||||||| ||||||| | |||||||    
T  42451903 ctgcgtgacttaagtcacacatgagtattttcgaaagtttggttgggag 42451855  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 28009200 - 28009259
Alignment:
Q  116 acacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaa 175  Q
    ||||||||||||||||| ||||||| | ||||||| ||||||| | ||||||| ||||||    
T  28009200 acacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaa 28009259  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 28066503 - 28066562
Alignment:
Q  116 acacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaa 175  Q
    ||||||||||||||||| ||||||| | ||||||| ||||||| | ||||||| ||||||    
T  28066503 acacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaa 28066562  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 82321 - 82274
Alignment:
Q  1 aaagattgaatgaaatcggaag---gagagagagggaagaagagaacc 45  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||||    
T  82321 aaagattgaatgaaatcggaagagagagagagaggaaagaagagaacc 82274  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 35720294 - 35720343
Alignment:
Q  122 gcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtga 171  Q
    ||||||||||| |||||||||||||||||  |||||| | ||||||||||    
T  35720294 gcgtgagttaactcacgcatgagtattttgaaaagttaggttgggagtga 35720343  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 9880863 - 9880799
Alignment:
Q  142 gagtattttagaaagttcgattgggagtgagcaaaacataatgaaagaagagcaatattccaaaa 206  Q
    ||||||||| |||||||| |||||||||||||||| | | |||  ||||||||||| ||| ||||    
T  9880863 gagtattttcgaaagttcaattgggagtgagcaaatcttgatgggagaagagcaattttctaaaa 9880799  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 5076546 - 5076498
Alignment:
Q  122 gcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtg 170  Q
    ||||||||||| ||||||| ||||||||| ||||||| | |||||||||    
T  5076546 gcgtgagttaactcacgcaggagtattttggaaagtttggttgggagtg 5076498  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 10378807 - 10378739
Alignment:
Q  109 aggtataacacctgcgtgagttaagtcacgcatgagtattttagaaagttcgattgggagtgagcaaaa 177  Q
    |||| ||||||| |||||||||||  |||| ||||||||||| |||| ||| |||| || |||||||||    
T  10378807 aggtttaacaccagcgtgagttaacgcacgtatgagtatttttgaaatttcaattgtgaatgagcaaaa 10378739  T

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