View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18006_high_26 (Length: 232)
Name: NF18006_high_26
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 9434516 - 9434312
Alignment:
| Q |
13 |
agaagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaatttgcagctgaggaaggagcttgatctttatgc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9434516 |
agaagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaatttgcagctgaggaaggagcttgatctttatgc |
9434417 |
T |
|
| Q |
113 |
ttcgcttgtcaattgctttaatctggaaggattgactactaggcatgataatgttgatattgttgttattagggagaatactgaaggggaatatgctggt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9434416 |
ttcgcttgtcaattgttttaatctggaaggattgactactaggcatgataatgttgatattgttgttattagggagaatactgaaggggaatatgccggt |
9434317 |
T |
|
| Q |
213 |
cttga |
217 |
Q |
| |
|
||||| |
|
|
| T |
9434316 |
cttga |
9434312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 31309273 - 31309475
Alignment:
| Q |
15 |
aagaataaggtttgtttgaaaggtggattagcgactccgatgggtggtggtgttagttcgcttaatttgcagctgaggaaggagcttgatctttatgctt |
114 |
Q |
| |
|
||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| |
|
|
| T |
31309273 |
aagaataaggtttgtcttaaaggtggattggttactcctatgggtggtggtgttagttcgcttaatgttcagttgaggaaagagcttgatctttatgctt |
31309372 |
T |
|
| Q |
115 |
cgcttgtcaattgctttaatctggaaggattgactactaggcatgataatgttgatattgttgttattagggagaatactgaaggggaatatgctggtct |
214 |
Q |
| |
|
| ||||| ||||| |||||||| || || |||| | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31309373 |
ctcttgttaattgttttaatcttcctgggttacctacacgacatgataacgttgatattgtagttattagggagaatactgaaggggagtatgctggtct |
31309472 |
T |
|
| Q |
215 |
tga |
217 |
Q |
| |
|
||| |
|
|
| T |
31309473 |
tga |
31309475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University