View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_high_28 (Length: 204)

Name: NF18006_high_28
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_high_28
NF18006_high_28
[»] chr8 (9 HSPs)
chr8 (1-200)||(43615384-43615583)
chr8 (1-162)||(20242653-20242814)
chr8 (1-162)||(20250346-20250507)
chr8 (78-155)||(33199412-33199490)
chr8 (112-162)||(20241062-20241112)
chr8 (112-162)||(20251955-20252005)
chr8 (9-49)||(5616863-5616903)
chr8 (1-157)||(16578811-16578967)
chr8 (6-94)||(24726606-24726694)
[»] chr1 (9 HSPs)
chr1 (8-162)||(15629371-15629525)
chr1 (1-154)||(2071561-2071715)
chr1 (75-162)||(6696015-6696102)
chr1 (1-146)||(2075099-2075245)
chr1 (75-162)||(15630170-15630257)
chr1 (5-88)||(3774414-3774497)
chr1 (1-51)||(9167912-9167962)
chr1 (1-51)||(11993554-11993603)
chr1 (113-159)||(28665018-28665063)
[»] chr4 (8 HSPs)
chr4 (1-162)||(16871577-16871738)
chr4 (5-159)||(54148205-54148358)
chr4 (82-162)||(16869513-16869593)
chr4 (9-89)||(24131745-24131825)
chr4 (75-158)||(16543360-16543443)
chr4 (113-162)||(37945522-37945571)
chr4 (1-51)||(24225978-24226028)
chr4 (113-159)||(54146652-54146697)
[»] chr2 (8 HSPs)
chr2 (1-162)||(8986853-8987014)
chr2 (1-162)||(32291080-32291242)
chr2 (1-162)||(38583515-38583675)
chr2 (1-148)||(29409109-29409256)
chr2 (75-162)||(8985574-8985661)
chr2 (11-87)||(42631686-42631762)
chr2 (5-159)||(1172792-1172944)
chr2 (90-147)||(32276954-32277011)
[»] chr7 (14 HSPs)
chr7 (1-162)||(46963088-46963249)
chr7 (1-162)||(44338976-44339137)
chr7 (1-162)||(15614274-15614435)
chr7 (1-133)||(48643547-48643679)
chr7 (1-159)||(21814353-21814510)
chr7 (75-159)||(2628270-2628354)
chr7 (75-162)||(46964442-46964529)
chr7 (1-51)||(17921334-17921384)
chr7 (112-162)||(44337384-44337434)
chr7 (75-151)||(6841471-6841547)
chr7 (101-162)||(6840630-6840691)
chr7 (113-157)||(26402360-26402404)
chr7 (9-88)||(11828004-11828083)
chr7 (121-162)||(26403493-26403534)
[»] chr6 (12 HSPs)
chr6 (5-159)||(10741702-10741855)
chr6 (9-162)||(18984431-18984584)
chr6 (1-158)||(33424005-33424165)
chr6 (1-162)||(9290678-9290825)
chr6 (1-84)||(21862491-21862574)
chr6 (103-162)||(22868489-22868548)
chr6 (75-159)||(21862689-21862773)
chr6 (75-162)||(18792867-18792954)
chr6 (6-49)||(2131686-2131729)
chr6 (1-48)||(8701729-8701776)
chr6 (5-46)||(5986884-5986925)
chr6 (1-46)||(28063138-28063184)
[»] chr3 (12 HSPs)
chr3 (1-162)||(42531216-42531376)
chr3 (1-162)||(46691473-46691633)
chr3 (1-162)||(50297386-50297547)
chr3 (1-154)||(814419-814572)
chr3 (1-162)||(814186-814346)
chr3 (1-159)||(16462893-16463050)
chr3 (75-162)||(42530590-42530676)
chr3 (71-162)||(50294654-50294743)
chr3 (101-162)||(30057111-30057172)
chr3 (9-49)||(22820996-22821036)
chr3 (75-159)||(18088161-18088244)
chr3 (5-47)||(2593232-2593274)
[»] chr5 (7 HSPs)
chr5 (1-162)||(24137523-24137685)
chr5 (1-51)||(9512384-9512434)
chr5 (113-162)||(11320499-11320547)
chr5 (1-49)||(40784084-40784132)
chr5 (76-130)||(17749699-17749753)
chr5 (113-162)||(11343949-11343997)
chr5 (114-158)||(6643402-6643446)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-133)||(14306-14438)
[»] scaffold0511 (1 HSPs)
scaffold0511 (75-162)||(11187-11274)
[»] scaffold0002 (1 HSPs)
scaffold0002 (75-162)||(406269-406356)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 43615384 - 43615583
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||  |||    
T  43615384 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgattcattgtgagtttgaagatatatgttagataataaaatattgaacttt 43615483  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttattaggtacaacttgatcacatatcttacctttgcttctc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  43615484 agttattgagcttttatattagtaagttagagtccattagattttattatatattttcttattaggtacaacttgatcacatatcttatctttgcttctc 43615583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 20242653 - 20242814
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | | || |||||| ||||||||||||||  |||     
T  20242653 ttagtatatttttcgtattttgtttgacaaactcacaatgcttctcgttgactcattgtgagtttgagggtagatgttaaataataaaatattggattta 20242752  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||  | ||||||||||||||||| |||   ||| ||||||||||||||||| ||||    
T  20242753 agttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttat 20242814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 20250507 - 20250346
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | | || |||||| ||||||||||||||  |||     
T  20250507 ttagtatatttttcgtattttgtttgacaaactcacaatgcttctcgttgactcattgtgagtttgagggtagatgttaaataataaaatattggattta 20250408  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||  | ||||||||||||||||| |||   ||| ||||||||||||||||| ||||    
T  20250407 agttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttat 20250346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 33199412 - 33199490
Alignment:
Q  78 tagataataaaatattgagttttagttattgagcttttatattagtaagttagagt-tcattagattttattatatatt 155  Q
    ||||||||||| ||||||  || ||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  33199412 tagataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatt 33199490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 20241062 - 20241112
Alignment:
Q  112 ttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  20241062 ttttatagtagtaagttagagtccgttagattttattatatattctcttat 20241112  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 20252005 - 20251955
Alignment:
Q  112 ttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  20252005 ttttatagtagtaagttagagtccgttagattttattatatattctcttat 20251955  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 5616863 - 5616903
Alignment:
Q  9 tttttcgtattttgtttgacaaactcacaatgcttcttgtt 49  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  5616863 tttttcatattttgtttgacaaactcacaatgcttcttgtt 5616903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 16578967 - 16578811
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||| |||||||||||| ||||||||||||||||| |||| |||||||| |   |   ||| ||| ||| ||| |||||||||||||| |||| |  ||     
T  16578967 ttaggatgtttttcgtaatttgtttgacaaactcataatgtttcttgttaatgcaacatgaatttgaaggtatgtgttagataataaagtattaatcttc 16578868  T
Q  101 agttattgagcttttatattagtaagttag-agttcattagattttattatatattct 157  Q
    |   ||||| | ||||||||| |||||||| ||| |||||||||||| ||||||||||    
T  16578867 aaccattgaacctttatattactaagttagcagtccattagatttta-tatatattct 16578811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 24726606 - 24726694
Alignment:
Q  6 atgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattg 94  Q
    |||||||| ||||||||||||||||| |||||||  || |||||||   ||  ||||||| ||| ||  ||||||||| ||||||||||    
T  24726606 atgttttttgtattttgtttgacaaattcacaatattttttgttgatgcatcatgagtttgaaggtaagtgttagatagtaaaatattg 24726694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 15629525 - 15629371
Alignment:
Q  8 gtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttttagttatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |  ||||||||||||||||||||| | || |||||||    
T  15629525 gtttttcgtattttgtttgacaaactcacaatgcttcttgttgactcattgtgagtttgagggtggatgttagataataaaatattgggcttaagttatt 15629426  T
Q  108 gagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15629425 ggacctttatattagtaagttagagttcattagattttattatatattctcttat 15629371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 2071715 - 2071561
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |   ||  ||||||| | |  |  |||||||||||||||||||| | ||     
T  2071715 ttagtatgtttttcgtattttgtttgacaaactcagaatgcttcttgttaatgcatcatgagtttgagggcaggtgttagataataaaatattgggctta 2071616  T
Q  101 agttattgagcttttatattagtaagttag-agttcattagattttattatatat 154  Q
    || ||||| || || ||||||||||||||| ||| |||||| ||||| |||||||    
T  2071615 agctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 6696015 - 6696102
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| ||||  | || |||||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttat 6696102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2075245 - 2075099
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |   ||  ||||||| | |  |  |||||||||||||||||||| | ||     
T  2075245 ttagtatgtttttcgtattttgtttgacaaactcagaatgcttcttgttaatgcatcatgagtttgagggcaggtgttagataataaaatattgggctta 2075146  T
Q  101 agttattgagcttttatattagtaagttag-agttcattagatttta 146  Q
    || ||||| || || ||||||||||||||| ||| |||||| |||||    
T  2075145 agctattgggccttaatattagtaagttagcagtccattaggtttta 2075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 15630257 - 15630170
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||| |||||||| ||||||| || | |||||| || |||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttat 15630170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 3774497 - 3774414
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaa 88  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||   ||  ||||||| | | || |||||||||||||||    
T  3774497 tatgtttttggtattttgtttgacaaactcacaatgcttcttgttgatgaatcatgagtttgagggtagatgttagataataaa 3774414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9167962 - 9167912
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttga 51  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9167962 ttagtttgtttttcgtattttatttgacaaactcacaatgcttcttgttga 9167912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11993554 - 11993603
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttga 51  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  11993554 ttagtatgtttt-cgtattttatttgacaaactcacaatgcttcttgttga 11993603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 28665018 - 28665063
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattctct 159  Q
    ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  28665018 tttatattagtaagttagagtccattag-gtttattatatattctct 28665063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 16871577 - 16871738
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| | | || ||||||||||||||| ||||  | ||     
T  16871577 ttagtatgtttttcgtattttgtttgacaaactcagaatgtttcttgttgactcattgtgagtttgagggtagatgttagataataaagtattaggctta 16871676  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  16871677 agttattgggcatttatattagtaagttagagtccattagattttattatatattatcttat 16871738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 54148205 - 54148358
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttttagtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||  ||||||| |   ||| |||||||||| |||  |||||| || || |    
T  54148205 tatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgatgcatcatgagtttgagagtatgtgttagataacaaagcattgagcttaagct 54148304  T
Q  105 attgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||  |||||||||||||||||||||||| || |||| |||||||||||||||||    
T  54148305 attaggcttttatattagtaagttagagtccaataga-tttattatatattctct 54148358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 16869513 - 16869593
Alignment:
Q  82 taataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttat 16869593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 24131745 - 24131825
Alignment:
Q  9 tttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaa 89  Q
    ||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||| | | || ||||||||||||||||    
T  24131745 tttttcgtattttgttgaacaaactcacaatgcttcttgttgattcattgtgagtttgagggtagatgttagataataaaa 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 16543360 - 16543443
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctc 158  Q
    |||||||||||||| || ||   || ||||||||  |||||||||||||||||||||||||||||  |||||||||||||||||    
T  16543360 tgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctc 16543443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 37945522 - 37945571
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  37945522 tttatattagtaagttagagtccattaaattttattatatattctcttat 37945571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24225978 - 24226028
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttga 51  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  24225978 ttagtatatttttcgtattttgtttgacaaacccacaatgattcttgttga 24226028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 54146652 - 54146697
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattctct 159  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  54146652 tttatattagtaagttagagtccattaga-tttatcatatattctct 54146697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 8986853 - 8987014
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||  | ||     
T  8986853 ttagtatgtttttcgtattttgtatgacaaactcagaatgcttcttgttgactcattgtgagtttgagggtagatgttagataataaagtattaggctta 8986952  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  8986953 agttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttat 8987014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 32291080 - 32291242
Alignment:
Q  1 ttagtatgtttt-tcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttt 99  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| | | || ||||||||||||||| ||||||| ||    
T  32291080 ttagtatgttttttcgtattttgtttgacaaactaacaatgcttcttgttgactcattgtaagtttgagggtaaatgttagataataaagtattgagctt 32291179  T
Q  100 tagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
     |||||||| |  ||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  32291180 aagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttat 32291242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 38583675 - 38583515
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||| |||||||| ||| ||||  |||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||  | ||     
T  38583675 ttagtatgttttt-gtattttgattggcaaatccacaatgcttcttgttgactcattgtgagtttgaaggtagatgttagataataaaatattaggctta 38583577  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    | |||||| || |||||||||||||||||||   | |||||||||||||||||||| |||||    
T  38583576 aattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttat 38583515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 29409256 - 29409109
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||| ||||||||||||||| |||||| |||||| ||||||   ||  ||||||| | | ||  |||||||||||||| ||||| | ||     
T  29409256 ttagtatgtttttcatattttgtttgacaagctcacagtgcttcgtgttgatgcatcatgagtttgagggtaggtgttagataataaagtattgtgctta 29409157  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttatt 148  Q
    || |||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  29409156 agctattgagcatttattttagtaagttagagtccattaaattttatt 29409109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 8985574 - 8985661
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| ||||  | || ||||||||  | ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8985574 tgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttat 8985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 42631762 - 42631686
Alignment:
Q  11 tttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataa 87  Q
    |||| ||||||||||||||||||||||||| ||||||||||   ||  ||||||| ||||||  |||||||||||||    
T  42631762 tttcttattttgtttgacaaactcacaatgtttcttgttgatcaatcatgagtttaaagataagtgttagataataa 42631686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 1172944 - 1172792
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttttagtt 104  Q
    |||||||| ||||||||||||||||||||||||||| || |||||||   ||  ||| ||| ||| ||| |||||||||||||| |||||   || |  |    
T  1172944 tatgttttccgtattttgtttgacaaactcacaatg-tttttgttgatgcatcatgaatttgaaggtatgtgttagataataaagtattgtacttaaact 1172846  T
Q  105 attgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||  || || |||||| ||| ||||||| |||| || |||||||||||||||||    
T  1172845 attaggccttaatattaataaattagagtccattcga-tttattatatattctct 1172792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 32276954 - 32277011
Alignment:
Q  90 tattgagttttagttattgagcttttatattagtaagttagagttcattagattttat 147  Q
    ||||||| || ||||||||  | ||||||||||||||||||||| |||||| ||||||    
T  32276954 tattgagcttaagttattggacctttatattagtaagttagagtccattaggttttat 32277011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 46963249 - 46963088
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||| | | || ||||||||||||||| ||||  | ||     
T  46963249 ttagtatgtttttcgtatattgtctgacaaactcagaatgcttcttgttgactcattgtgagtttgagggtagatgttagataataaagtattaggctta 46963150  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  46963149 agttattgggcatttatattagtaagttagagtccattagattttattagatattctcttat 46963088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 44338976 - 44339137
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| | | || |||||| ||||||||||||||  |||     
T  44338976 ttagtatatttttcgtattttgtttgacaaactcacaatgcttctcgttgactcattgtgagtttgagggtagatgttaaataataaaatattggattta 44339075  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||  | ||||||||||||||||| |||   ||| ||||||||||||||||| ||||    
T  44339076 agttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttat 44339137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 15614435 - 15614274
Alignment:
Q  1 ttagtatgttttt-cgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttt 99  Q
    ||||||||||||| | ||||||||||||||||||||||||  |||||||||||| ||| ||||||| | | || ||||||||||||||| ||||| | ||    
T  15614435 ttagtatgttttttcatattttgtttgacaaactcacaata-ttcttgttgactcattttgagtttgagggtagatgttagataataaagtattgggctt 15614337  T
Q  100 tagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
     ||||||||  | |||||||||| |||||||||| |||||| |||||||||||||||| ||||    
T  15614336 aagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttat 15614274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 48643547 - 48643679
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||| | | || ||||||||| ||||||||||  ||||     
T  48643547 ttagtatgtttttcgtattttatttgacaaactcacaatgtttattgttgactcattgtgagtttgagggtagatgttagatgataaaatattaggttta 48643646  T
Q  101 agttattgagcttttatattagtaagttagagt 133  Q
    |||| ||| || |||||||||| ||||||||||    
T  48643647 agtttttgggcctttatattagcaagttagagt 48643679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 21814353 - 21814510
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||    ||  ||||||| | | ||   ||||||||||||| ||||||| ||     
T  21814353 ttagtatgtttttcatattctgtttgacaaactcacaatgcttcttgttgttgcatcatgagtttgagggtaggcgttagataataaagtattgagctta 21814452  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    || |||| ||| ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  21814453 agatattaagcctttatattagtaagttagagtccattag-gtttattatatattctct 21814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 2628354 - 2628270
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||||||||||||| ||||||| || ||||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctct 2628270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 46964529 - 46964442
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||||||||  |||  | || |||||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  46964529 tgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttat 46964442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17921384 - 17921334
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttga 51  Q
    ||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  17921384 ttagtatgtttttcgtattttgtttgacaaactcacattgtttctggttga 17921334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 44337384 - 44337434
Alignment:
Q  112 ttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  44337384 ttttatagtagtaagttagagtccgttagattttattatatattctcttat 44337434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattata 151  Q
    |||||||||||||||||| |   || |||||||| || ||||||| ||||||||||||| | |||||||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 6840691 - 6840630
Alignment:
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||| ||||||||||||| | |||| |||||||||||||||| ||||    
T  6840691 agttattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttat 6840630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 26402360 - 26402404
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattct 157  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||    
T  26402360 tttatattagcaagttagagtttattaaattttattatatattct 26402404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 11828083 - 11828004
Alignment:
Q  9 tttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaa 88  Q
    ||||| |||||||| || |||||||||||||||||||||||||   ||  ||||||||| | ||  ||||||||||||||    
T  11828083 ttttttgtattttgatttacaaactcacaatgcttcttgttgatgcatcatgagttttagggtaggtgttagataataaa 11828004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 26403493 - 26403534
Alignment:
Q  121 agtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||||||   |||||||||||||||||||||||||||    
T  26403493 agtaagttagagccgattagattttattatatattctcttat 26403534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 10741702 - 10741855
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttttagtt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | | || ||||||||||||||||||||| | || ||||    
T  10741702 tatgtttttcgtattttgtttgacaaacttacaatgcttcttgttgactcattgtgagtttgagggtagatgttagataataaaatattgggcttaagtt 10741801  T
Q  105 attgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||| |  |||||||||| |||||||||| ||||||| |||||||||||||||||    
T  10741802 attgggtctttatattagaaagttagagtccattaga-tttattatatattctct 10741855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 18984431 - 18984584
Alignment:
Q  9 tttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttttagttattg 108  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| | | || |||||| |||||||||||||| | ||   ||||||    
T  18984431 tttttcgtattttgtttgacaaactcacgatgcttctcgttgactcattgtgagtttgagggtagatgttaaataataaaatattgggcttagattattg 18984530  T
Q  109 agcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
     || ||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  18984531 ggcctttatattagtaagttagagtacattatgttttattatatattctcttat 18984584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 33424165 - 33424005
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgctt---cttgttgacttattgtgagttttaagatatatgttagataataaaatattgagt 97  Q
    |||||||||||||||||||||| |||| ||| ||  |||||||   |||||||||| ||||||||||| | | |  | ||||||||||||| |||||||     
T  33424165 ttagtatgtttttcgtattttgattgaaaaattcgtaatgcttattcttgttgactcattgtgagtttgagggttgacgttagataataaagtattgagc 33424066  T
Q  98 tttagttattgagcttttatattagtaagttagagttcattagattttattatatattctc 158  Q
    || |||||||| |  ||||||||||||||||| |||||||||| |||||||||||||||||    
T  33424065 ttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctc 33424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 9290825 - 9290678
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||||||||| ||||||||||| | | || |||||||||||||||                
T  9290825 ttagtatgcttttcgtattttgtcaaacaaactcacaatgcttcttgttgactcattgtgagtttgagggtagatgttagataataaa------------ 9290738  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
       |||||||| ||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  9290737 --gtattgagcctttatattaataagttagagtccattaggttttattatatattctcttat 9290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21862491 - 21862574
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataa 84  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | | | || |||||||||||    
T  21862491 ttagtatgtttttcgtattttgcttgacaaactcacaatgcttcttgttgactcattgtgagtctgaggctagatgttagataa 21862574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 22868489 - 22868548
Alignment:
Q  103 ttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  22868489 ttattgggcttttatattagtaagttagagtccattaggttttattatatattctcttat 22868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 21862689 - 21862773
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||||||||||||| ||||||| || || ||||| |  |||||||||| |||||||||| |||||| ||||||||||||||||||    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctct 21862773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 18792954 - 18792867
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| ||||| | || |||||||||||   ||||||||||||||| ||| |||||  ||||||| |||||||||||||    
T  18792954 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttat 18792867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 2131729 - 2131686
Alignment:
Q  6 atgtttttcgtattttgtttgacaaactcacaatgcttcttgtt 49  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  2131729 atgtttttcatattttgtttgacaaactcataatgcttcttgtt 2131686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8701729 - 8701776
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgt 48  Q
    |||||||||| || || |||||||||||||||||||||||||||||||    
T  8701729 ttagtatgttgtttgtgttttgtttgacaaactcacaatgcttcttgt 8701776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 5986925 - 5986884
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttctt 46  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  5986925 tatgttgttcgtattttgtttcacaaactcacaatgcttctt 5986884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28063184 - 28063138
Alignment:
Q  1 ttagtatgttt-ttcgtattttgtttgacaaactcacaatgcttctt 46  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  28063184 ttagtatgtttcttcgtattttgtttaacaaaatcacaatgcttctt 28063138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 42531216 - 42531376
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||||||||||| | | || |||||||||||||||  |||| | ||     
T  42531216 ttagtatgtttttcatattttgtttgaaaaactcacaatgctt-ttgttgactcattgtgagtttgagggtagatgttagataataaaggattgggcttg 42531314  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  42531315 agttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttat 42531376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 46691633 - 46691473
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| | | || ||||||||||||||| ||||||  ||     
T  46691633 ttagtatgtttttcgtattttgtttaacaaactcacaatgcttcttgttgactcattgtaagtttgagggtagatgttagataataaagtattgaactta 46691534  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||  | |||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  46691533 agttattggacctttatactagtaagttagagtccattag-ttttattatatattctcttat 46691473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 50297386 - 50297547
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  ||| | | || ||||||||||||||| ||||| | ||     
T  50297386 ttagtatgtttttcgtattttgtttgacaaactcacaatgtttcttgttgactcattgtggatttgagggtagatgttagataataaagtattgtgctta 50297485  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    ||||||||||  |||||||||||||||||||||||||||  ||||||||||| ||| |||||    
T  50297486 agttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttat 50297547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 814572 - 814419
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | | || ||||||||||||||| |||||   ||     
T  814572 ttagtatgtttttcgtattttgtttgacaaactcacaatgtttcttgttgactcattgtgagtttgagggtagatgttagataataaagtattggactta 814473  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatat 154  Q
    |||||||| || ||||||||||||||||||||| |||||| |||  ||||||||    
T  814472 agttattgggcatttatattagtaagttagagtccattaggtttcgttatatat 814419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 814186 - 814346
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||| |||||| | | ||  |||||||||||||| |||||   ||     
T  814186 ttagtatgttcttcgtattttgtttgacaaagtcacaatgtttcttgttgactcattgagagtttgagggtagttgttagataataaagtattggactta 814285  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||||||||||||||||| |||||| |||  || |||||||||||||    
T  814286 agttattgggcatttatattagtaagttagagtccattaggtttcgtt-tatattctcttat 814346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 16462893 - 16463050
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||    ||  ||||||| | | ||   ||||||||||||| ||||||| ||     
T  16462893 ttagtatgtttttcatattctgtttgacaaactcacaatgcttcttgttgttgcatcatgagtttgagggtaggcgttagataataaagtattgagctta 16462992  T
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    || |||| ||| ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  16462993 agatattaagcctttatattagtaagttagagtccattag-gtttattatatattctct 16463050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 42530590 - 42530676
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| |||||   || ||||| ||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  42530590 tgttagataataaagtattggacttgagttagtga-cttttatattagtaaattaaagttcattaggttttattatatattctcttat 42530676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 71 - 162
Target Start/End: Original strand, 50294654 - 50294743
Alignment:
Q  71 tatatgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||| ||||| ||||| | || ||||||||| |||| |||||| ||||||||||| |||||| |||||||||||||| ||||||    
T  50294654 tatatgttagatgataaagtattg-gcttaagttattgaccttt-atattaataagttagagtccattaggttttattatatattatcttat 50294743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 30057111 - 30057172
Alignment:
Q  101 agttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||| || ||||||||  ||||||||||| ||||||||||| ||||||||||||||||    
T  30057111 agttattgggcatttatattcataagttagagtccattagattttgttatatattctcttat 30057172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 22821036 - 22820996
Alignment:
Q  9 tttttcgtattttgtttgacaaactcacaatgcttcttgtt 49  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  22821036 tttttcatattttgtttgacaaactcacaatgcttcttgtt 22820996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 18088244 - 18088161
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctct 159  Q
    |||| ||||||||| ||||| | || || ||||  || ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  18088244 tgttggataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattag-gtttattatatattctct 18088161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2593274 - 2593232
Alignment:
Q  5 tatgtttttcgtattttgtttgacaaactcacaatgcttcttg 47  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||    
T  2593274 tatgtttttcgtattttctttaacaaactcacaatgtttcttg 2593232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 24137523 - 24137685
Alignment:
Q  1 ttagtatgtttt-tcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagttt 99  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||||||||| | | || || ||||| |||||| ||||||| ||    
T  24137523 ttagtatgttttttcgtattttgtttgacaaactcacaatccttcttgttgattcattgtgagtttgagggtagattttagacaataaagtattgagctt 24137622  T
Q  100 tagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
     |||||||| || |||| | ||||||||||||||  ||||| |||||||||||||||||||||    
T  24137623 cagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttat 24137685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 9512384 - 9512434
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttga 51  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  9512384 ttagtatgtttttcatattttgtatgacaaactcacaatacttcttgttga 9512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 11320547 - 11320499
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  11320547 tttatattagtaagttggagtccatta-attttattatatattctcttat 11320499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40784084 - 40784132
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgtt 49  Q
    |||| ||||||||| |||||||||||||||||| | |||||||||||||    
T  40784084 ttagaatgtttttcatattttgtttgacaaactaataatgcttcttgtt 40784132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 17749699 - 17749753
Alignment:
Q  76 gttagataataaaatattgagttttagttattgagcttttatattagtaagttag 130  Q
    |||||| ||||||||||| ||||| |||||||||  |||||||||| ||||||||    
T  17749699 gttagaaaataaaatattaagtttaagttattgaagttttatattactaagttag 17749753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 11343997 - 11343949
Alignment:
Q  113 tttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||||||||| ||||||  |||||||||||| ||||||||    
T  11343997 tttatattagtaagttagag-tcattaagttttattatatactctcttat 11343949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 6643402 - 6643446
Alignment:
Q  114 ttatattagtaagttagagttcattagattttattatatattctc 158  Q
    ||||||||||||| ||||||  |||| ||||||||||||||||||    
T  6643402 ttatattagtaagatagagtcaattaaattttattatatattctc 6643446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14438 - 14306
Alignment:
Q  1 ttagtatgtttttcgtattttgtttgacaaactcacaatgcttcttgttgacttattgtgagttttaagatatatgttagataataaaatattgagtttt 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||  ||||||| ||||||||||| | | || |||||| |||||||||||||| | ||     
T  14438 ttagtatgtttttcgtattttgtttgacaaaattacaatgcttcccgttgactcattgtgagtttgagggtagatgttaaataataaaatattgggctta 14339  T
Q  101 agttattgagcttttatattagtaagttagagt 133  Q
    | |||| | || |||||||||||||||||||||    
T  14338 aattatggggcctttatattagtaagttagagt 14306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 162
Target Start/End: Original strand, 11187 - 11274
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| ||||| | || |||||||||||   ||||||||||||||| ||| |||||  ||||||| |||||||||||||    
T  11187 tgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttat 11274  T

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Target: scaffold0002 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 406356 - 406269
Alignment:
Q  75 tgttagataataaaatattgagttttagttattgagcttttatattagtaagttagagttcattagattttattatatattctcttat 162  Q
    |||||||||||||| ||||  |||| |||||||| || |||||||||| |||||||||| | |||  |||||||||||||||| ||||    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattat 406269  T

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