View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_high_3 (Length: 503)
Name: NF18006_high_3
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 12884272 - 12884346
Alignment:
| Q |
9 |
gaagaatattgtgttgctggaggaacctgcgggtgggaattggttcaatatgaaggttgttatgggggtagtaaa |
83 |
Q |
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| T |
12884272 |
gaagaatattgtgttgctggaggaacctgcgggtgggaattggttcaatatgaaggttgttatgagggtagtaaa |
12884346 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 12884447 - 12884533
Alignment:
| Q |
119 |
tgggtgggtgataaccctcttcgtgttaggttccctagaatgaattcactttcaaaccaaaaggaaggcttctttaacgaaatggaa |
205 |
Q |
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| T |
12884447 |
tgggtgggtgataaccctcttcgtgttaggttccctcaaatttattcactttcagaccaaaagaaaggcctcattaacgaaatggaa |
12884533 |
T |
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