View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_high_4 (Length: 495)
Name: NF18006_high_4
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 45548701 - 45548223
Alignment:
| Q |
1 |
ataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaaggagcgctgattgaatatgacaaccatac |
100 |
Q |
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| T |
45548701 |
ataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaaggagcgctgattgaatatgacaaccatac |
45548602 |
T |
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| Q |
101 |
tatggaagttttttatgt-atttgcaatacaattttgttggttgtaagtttgtaactggtgaggagttctgaacagcaagttttcattagaaagaagagt |
199 |
Q |
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| T |
45548601 |
tatgaaagttttttatgttatttgcaatacaattttgttggttgtaagtttgtaactggtgaggagttctgaacagcaagttttcattagaaagaagagt |
45548502 |
T |
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| Q |
200 |
ttcctcctttattaagttactataaaactttaacatggagtaaaatcttttaaattgagtacatttcttataaaatgatttatcgacattactttctcat |
299 |
Q |
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| T |
45548501 |
ttcctcctttattaagttactataaaactttaacatggagtaaaatcttttaaattgagtacatttcttataaaatgatttatcgacattactttctcat |
45548402 |
T |
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| Q |
300 |
atttgagttatccaaagacaatttcaaatagacaaaactacgcccgcaggtggcgttacatgcacctcccagtcccagacttgaagtcggatctcaaagc |
399 |
Q |
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| T |
45548401 |
atttgagttatccaaagacaatttcaaatagacaaaactacgcccgcaggtggcgttacatgcatctcccagtcccagacttgaagtcggatctcaaagc |
45548302 |
T |
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| Q |
400 |
catccatgaaagaaatagcgtgtaaataccagagaaagccttttggccgattggattgagcttatgcaaaataactaat |
478 |
Q |
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| T |
45548301 |
catccatgaaagaaatagcgtggaaataccggagaaagccttttggccgattggattgagcttatgcaaaataactaat |
45548223 |
T |
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