View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_1 (Length: 789)
Name: NF18006_low_1
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 247 - 623
Target Start/End: Original strand, 16087433 - 16087805
Alignment:
| Q |
247 |
aataagcaccaaggattaaagacataagaaaatagctcaaaacaatattacatgaatcactacttcagctcatgatgattaagtttaaagtattctaact |
346 |
Q |
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| T |
16087433 |
aataagcaccaaggattaaagacataagaaaatagctcaaaacaatattacatgaatcactacttcagctcatgatgattaagtttaaagtattctaact |
16087532 |
T |
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| Q |
347 |
tctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaa |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16087533 |
tctaagatgctatcatagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaa |
16087632 |
T |
|
| Q |
447 |
ataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctca |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16087633 |
ataatatttcactaattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcacgttaacttgtctca |
16087732 |
T |
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| Q |
547 |
aacacattttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaattttaaaatcaacacaa |
623 |
Q |
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| T |
16087733 |
aacacattttgctcaaaataatagtt--aaaaaccaagatcacaatttg-atggtagaaa-tttaaaatcaacacaa |
16087805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 16087279 - 16087434
Alignment:
| Q |
20 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttacacgttacattataatatgattata |
119 |
Q |
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| T |
16087279 |
gcctataaaccagcaaagctttaaaaagcaaacatgtttaacatattagtcaggcgctcggttcaaagaactttac----cacattataatatgattata |
16087374 |
T |
|
| Q |
120 |
cgttccaacataatgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
179 |
Q |
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| T |
16087375 |
tgttccaacatagtgactcaagattttagaaagtcaaaatcgcacactctcatactctaa |
16087434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 721 - 771
Target Start/End: Original strand, 16087847 - 16087897
Alignment:
| Q |
721 |
ttatctttgcttaatattgttgtataagttggctgctgacatagttctatc |
771 |
Q |
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| T |
16087847 |
ttatctttgcttaatattgttgtataagttggctgctgacatagttctatc |
16087897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 361 - 667
Target Start/End: Original strand, 38643027 - 38643343
Alignment:
| Q |
361 |
atagttctcatttatacacacaca------aaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatatt |
454 |
Q |
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| T |
38643027 |
atagttctcatttatacacacacacaaaaaaaaatgttaaaaaggaattctcctactataaatatcacatattcatgagaaccaagactaaaataatatt |
38643126 |
T |
|
| Q |
455 |
tcact-aattaaagtttatcaaaagatgacatagtaagtaatccacatctaataaaatatttctatttgttaatttcatgttaacttgtctcaaacacat |
553 |
Q |
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| T |
38643127 |
tcactaaattaaactttatcaaaa-atgacatagtaagtattccacatctaataaaatatttcaatctgtttatttcactataatttgtttcaaacgtat |
38643225 |
T |
|
| Q |
554 |
tttgctcaaaataatagtttaaaaaaccaagatcacaatttgaacggtagaaa----ttttaaaatcaacacaaaagtccatcttcattaataacaagct |
649 |
Q |
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|||||||||| ||||||||||| | | ||||| |||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||| || |
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| T |
38643226 |
tttgctcaaagtaatagtttaagagatcaagagtgcaattttaatggtagaaaacagatttaaaatccatacaaaagtccatcttcattactaccaaact |
38643325 |
T |
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| Q |
650 |
atcgtgatcataacaaca |
667 |
Q |
| |
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||||| || |||| |||| |
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| T |
38643326 |
atcgtaataataataaca |
38643343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 362 - 455
Target Start/End: Complemental strand, 19974514 - 19974422
Alignment:
| Q |
362 |
tagttctcatttatacacacacaaaattgttaaaaaggaattctcccactataaatatcatatattcatgagaaccaagtttaaaataatattt |
455 |
Q |
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|||| |||||| ||||||||| ||||| |||||||| ||||||||||||| |||||| || ||| ||||||| ||||| |||||| |||||||| |
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| T |
19974514 |
tagtcctcattcatacacaca-aaaatcgttaaaaaagaattctcccactgtaaataccacatactcatgagcaccaaatttaaattaatattt |
19974422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 53838100 - 53838144
Alignment:
| Q |
321 |
atgattaagtttaaagtattctaacttctaagatgctatcatagt |
365 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
53838100 |
atgattaagcttaaggtattctaacttctaagatgctatcatagt |
53838144 |
T |
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