View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_10 (Length: 489)
Name: NF18006_low_10
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 3100173 - 3099730
Alignment:
| Q |
1 |
gtccactttcctccatcaatttctccttcaactcttctacactacttcctttaaaggtaaataatgaccctttatttgcatcaataacttcacctttttc |
100 |
Q |
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| T |
3100173 |
gtccagtttcctccaacaatttctccttcaactcttctacactacttcctttaaaggtaaataatgaccctttatttgcatcaataacttcaccattttc |
3100074 |
T |
|
| Q |
101 |
attaccaacatcataaaatataaccctaccttctttaactggtgatggagaaggatcttctaaatattcaagttgctcctggtaaattaaaagaagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3100073 |
attaccaacatcataaaatataaccctaccttctttaactggtgatggagaaggatcttctaaatattcaagttgctcctggtaaattaaaagaagaaaa |
3099974 |
T |
|
| Q |
201 |
atgttagctgaatagaatattgataattattattatcactaatgttagctgaataattcactttatatatatcttttcacaattaataaannnnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3099973 |
atgttagctgaatagaatattgataattattattatcactaatgttagctgaataattcactttatatatatcttttcacaattaataaaaattaatttt |
3099874 |
T |
|
| Q |
301 |
gaatgatatcacattgcaaacaaagacataaatgtacaatgcctagttaagannnnnnnnnnnnnnnnnnnacagaaattcctaattaagttatcatgcg |
400 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3099873 |
gaatgatatcacattgcaaagaaagacataaatgcacaatgcctagttaagatttttatttttatttttttacagaaattcctaattaagttatcatgcg |
3099774 |
T |
|
| Q |
401 |
atgaatatctctgcac-aaatataatatatgtccttgacccctc |
443 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3099773 |
atgaatatctctgcacaaaatataatatatgtccttgacccctc |
3099730 |
T |
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