View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_11 (Length: 489)
Name: NF18006_low_11
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 8635357 - 8635828
Alignment:
| Q |
1 |
agtttagttggttgaaaaccacatgtcttagaattccagctcaaaccaatacatagtgaataagttagaaatgaaactagagaaactaaatagcaagcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
8635357 |
agtttagttggttgaaaaccacatgtcttagaatgccagctcaaaccaatacatagtgaataagttagaaatgaaactagataaactaaataacaagcca |
8635456 |
T |
|
| Q |
101 |
ataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgccttacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8635457 |
ataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacc |
8635556 |
T |
|
| Q |
201 |
tgatgcatttggcccctatgggagtctatgcatcgatggaatacctatatcactatgtgtagccacacattcccattaatcttggtgctctccttggtcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8635557 |
tgatgcatttggcccctatgggagtctatgcattgatggaatacctatatcactatgtgtagccacacattcccattaatcttggtgctctccttggtcc |
8635656 |
T |
|
| Q |
301 |
accaccagaaaacaatggctgaaaccctcgtatgtgagggtcaccatgtgacatccacatatcagacataagtctcaaaactggcctacccatcgcagca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8635657 |
accaccagaaaacaatggctgaaaccctcgtatgtgagggtcaccatgtgacatccacatatcagacataagtcttaaaactggcctacccatcgcagca |
8635756 |
T |
|
| Q |
401 |
gccataacaccattcacattcgcactactgttagcaatttgttgctaattttaatttgtattaccttctcaa |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8635757 |
gccataacaccattcacattcgcactactgttagcaatttgttgctaattttgatttgtattaccttctcaa |
8635828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8623882 - 8623679
Alignment:
| Q |
1 |
agtttagttggttgaaaaccacatgtcttagaattccagctcaaaccaatacatagtgaataagttagaaatgaaactagagaaactaaatagcaagcca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
8623882 |
agtttagttagttgaaaaccacatgtcttagtatgccagctcaaaccaatacatagtgaataagttagaaatgaaactagagaaacgaaataacaagcca |
8623783 |
T |
|
| Q |
101 |
ataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgccttacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8623782 |
ataaaatattgttttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacc |
8623683 |
T |
|
| Q |
201 |
tgat |
204 |
Q |
| |
|
|||| |
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|
| T |
8623682 |
tgat |
8623679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 8623325 - 8623218
Alignment:
| Q |
358 |
catatcagacataagtctcaaaactggcctacccatcgcagcagccataacaccattcacattcgcactactgttagcaatttgttgctaattttaattt |
457 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8623325 |
catatcagacatgggcctcaaaactggcctacccatcacagcagccatatcaccattcacattcgcactactgttagcaattaattgctaattttaattt |
8623226 |
T |
|
| Q |
458 |
gtattacc |
465 |
Q |
| |
|
|||||||| |
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|
| T |
8623225 |
gtattacc |
8623218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 470
Target Start/End: Original strand, 43914173 - 43914443
Alignment:
| Q |
199 |
cctgatgcatttggcccctatgggagtctatgcatcgatggaatacctatatcactatgtgtagccacacattcccattaatcttggtgctctccttggt |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| ||||| | || |||| || ||| ||||||||||| || ||||||| ||||||| |
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| T |
43914173 |
cctgatgcatttggccccattgggagtctatgcatcgacggaataactatacctctctgtgcagacac-cattcccattagtcctggtgctacccttggt |
43914271 |
T |
|
| Q |
299 |
ccaccaccagaaaacaatggctgaaaccctcgtatgtgagggtcaccatgtgacatccacatat---cagacataagtctcaaaactggcctacccatcg |
395 |
Q |
| |
|
|||||||||||||| | | | || |||||| | ||||||||||||||||||||||||||||||| |||| || | |||||||||||||| ||||||| |
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|
| T |
43914272 |
ccaccaccagaaaatatttgttgtaaccctggcatgtgagggtcaccatgtgacatccacatattatcagatattggcctcaaaactggccttcccatcg |
43914371 |
T |
|
| Q |
396 |
cagcagccataacaccattcacattcgcactactgttagcaatttgttgctaattttaatttgtattaccttctc |
470 |
Q |
| |
|
| | |||||| ||||||||||| | ||||| | || |||||||||||| ||||| ||| ||||||| |||| |
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|
| T |
43914372 |
gacc---cataacgccattcacattggtactaccggtaacaatttgttgctgattttgattcatattaccatctc |
43914443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 187
Target Start/End: Original strand, 43913633 - 43913810
Alignment:
| Q |
11 |
gttgaaaaccacatgtcttagaattccagctcaaaccaa--tacatagtgaataagttagaaatgaaactagagaaactaaatagcaagccaataaaata |
108 |
Q |
| |
|
|||||||||||||||| |||| || |||||| ||||||| || |||||||||||||| |||||||||| |||||||| ||||| | || ||||||||| |
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| T |
43913633 |
gttgaaaaccacatgtattagtataccagctaaaaccaaaatagatagtgaataagtt-gaaatgaaaccagagaaacaaaataactagt-aataaaata |
43913730 |
T |
|
| Q |
109 |
ttgtt-ttgtcattaaccttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcaca |
187 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||| |||| ||| || ||||||| ||||| ||||||| |
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| T |
43913731 |
ttgttcttgtcattaaccttattacatgctacaaaggaaccggtctggcgccgacaatcttcttttgtcagtaagtcaca |
43913810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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