View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_12 (Length: 487)
Name: NF18006_low_12
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 4271630 - 4271181
Alignment:
| Q |
18 |
aatgacatagttatatggtacattatcattcattttttaaaatacctttctgaatcagnnnnnnnnnnnnnnnnacttgccttgtatgttgatttgatac |
117 |
Q |
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| T |
4271630 |
aatgacatagttatatggtacattatcattcatttttcaaaatacctttctgaatcagttttgtttttgttttcacttgccttgtatgttgatttgatac |
4271531 |
T |
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| Q |
118 |
caccattttcatgagatgaagctaggatgacagaaaactatattacgatgatacaaataaatcaagattattagtcatt-gctagaacaacaagctggta |
216 |
Q |
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| T |
4271530 |
caccattttcatgagatgaagctaagatgacagaaaactatattacgatgatacaaataaatcaagattattagtcatttgctagaat------ctggta |
4271437 |
T |
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| Q |
217 |
caaaagattaacggaacagttatcgcaaacaaacacatgacgttcggtaatgaagttcagccaattgtgtctatatctccgactacaaagtagcggcaat |
316 |
Q |
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| T |
4271436 |
caaaagattaacggaacagttatcacaaacaaacacatgacgttcggtaatgaagttcagccaaatgtgtctatgtctccgactacaaagtagcggcaat |
4271337 |
T |
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| Q |
317 |
tatattttattatttgcgaaagattttggtttacagtgaactgtaatgtgggacatttgcatcccacaccctcagtcgcccccacaacaaaaaattggac |
416 |
Q |
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| T |
4271336 |
tatgttttattatttgcgaaagattttggtttacagtgaactgtaatgtgggacctttgcctcccacaccctcagtcgcccccacaacaaaaaattggac |
4271237 |
T |
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| Q |
417 |
cagatgctcattaggccaagcgcaagggctaggtctcactcgctttgctcattcatctc |
475 |
Q |
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| T |
4271236 |
caaatgttcattaggcca---gcaagggctaggtctcactcgctttgctcattcgtctc |
4271181 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 31592893 - 31592834
Alignment:
| Q |
248 |
aacacatgacgttcggtaatgaagttcagccaattgtgtctatatctccgactacaaagt |
307 |
Q |
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| T |
31592893 |
aacacatgatgtttggttatgaagttcggccaattgtgtctatctctccaactacaaagt |
31592834 |
T |
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