View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_13 (Length: 474)
Name: NF18006_low_13
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 9619511 - 9619769
Alignment:
| Q |
1 |
acttccatagttggttctagaaaacctttctctacctccaaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcaga |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9619511 |
acttccgtagttggttctagaaaacctttctctacctccaaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcaga |
9619610 |
T |
|
| Q |
101 |
tttgctggagcttttacctttcatacatttgaatttcatgtgacttcaagaatacttgctaatcattcagcgtcgttgtttaagatcttttggctcttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9619611 |
tttgctggagcttttacctttcatacatttgaatttcatgtgactccaagaatacttgctaatcattcagcgtcgttgtttaagatcttttggctcttga |
9619710 |
T |
|
| Q |
201 |
atggctactacgacataatcgaactgccttgtaagtgtgtgcgcaattttttccctgac |
259 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9619711 |
atggctactacggcataatcgaactgccttgtaagtgtgcgcgcaattttttccctgac |
9619769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 9619766 - 9619899
Alignment:
| Q |
300 |
tgaccaacttatcaattttgnnnnnnntaaatccttttcatgaaattagcagctcaaactgtcggttaaattggatccattcctccttgttttgagcata |
399 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9619766 |
tgaccaacttatcaattttgaaaaaaataaatcattttcatgaaattagcagctcaaactgtcggttaaattggatccattcctcgttgttttgagcata |
9619865 |
T |
|
| Q |
400 |
atttcccatgctttcttagctgttgtagtatgaa |
433 |
Q |
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| T |
9619866 |
atttcccatgcttccttagctgttgtagtatgaa |
9619899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 1347251 - 1347197
Alignment:
| Q |
59 |
ttgcggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagctt |
113 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||| |||| |||||||| |
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| T |
1347251 |
ttgcggtctaccttcctttgcacaaatccctaatttgtcagttttgttggagctt |
1347197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 8675805 - 8675854
Alignment:
| Q |
63 |
ggtctaccctcctttgcacaaatcacttatttgtcagatttgctggagct |
112 |
Q |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagatttgttggagct |
8675854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 19653307 - 19653263
Alignment:
| Q |
50 |
cctctttggttgcggtctaccctcctttgcacaaatcacttattt |
94 |
Q |
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| T |
19653307 |
cctctttggttgcggtctacattccgttgcacaaatcactcattt |
19653263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 32241262 - 32241181
Alignment:
| Q |
22 |
aaacctttctctacctccaaagttctgccctctttggttgcggtctaccctcctttgcacaaatcacttatttgtcagattt |
103 |
Q |
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||||||| ||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||| || || |||||||||| |
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| T |
32241262 |
aaaccttgctctacctctaaagttttgccctctttggttgaggtctaccatcctttgcacaaatccctcatctgtcagattt |
32241181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 32223986 - 32223902
Alignment:
| Q |
22 |
aaacctttctctacctccaaagttctgccctct---ttggttgcggtctaccctcctttgcacaaatcacttatttgtcagattt |
103 |
Q |
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||||||||||||||||| |||||| | ||||| ||||||| |||||||| ||||||||||||||| | || |||||||||| |
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| T |
32223986 |
aaacctttctctacctctaaagttttatcctctcaattggttgaggtctaccttcctttgcacaaatcccccatctgtcagattt |
32223902 |
T |
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