View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_14 (Length: 439)
Name: NF18006_low_14
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 201 - 422
Target Start/End: Original strand, 8679312 - 8679533
Alignment:
| Q |
201 |
acaataaaagtataatttgccttgtgataattttagcaaaaagccaaaattacacattgtacagcattgatagatttcacattgcatcccttaaatccag |
300 |
Q |
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| T |
8679312 |
acaataaaagtatagtttgccttgtgataattttagcaaaaagccaaaattacacattgtacagcattgatagatttcacagtgcatcccttaaatccag |
8679411 |
T |
|
| Q |
301 |
ccattttgatcagatattcccactctttcagggtacgttctttgccatagttagtgtgggccatcatcaccgtatctaagactaaccctacatctttata |
400 |
Q |
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| T |
8679412 |
ccattttgatcacatattcccactctttcagggtacgttctttgccatagttagtgtgtgccatcatcaccatgtctaacactaaccctacatctttata |
8679511 |
T |
|
| Q |
401 |
cttgtggtttcctccttcttca |
422 |
Q |
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|||||||||||||||||||||| |
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| T |
8679512 |
cttgtggtttcctccttcttca |
8679533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 8677707 - 8677901
Alignment:
| Q |
13 |
aatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaataatttcctcgtatctcatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8677707 |
aatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatctcatc |
8677806 |
T |
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| Q |
113 |
aaggtggacaatctttccaatggatctaatgattatttattatattctacatcatggtactataatgcataatgcatgcttaattaacacaataa |
207 |
Q |
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| T |
8677807 |
aaggtggacaatctttaatatggatctaatgattatctattatattctacatcatggtactataatgcataatgcatgcttaattaacacaataa |
8677901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 8696973 - 8696816
Alignment:
| Q |
13 |
aatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaataatttcctcgtatctcatc |
112 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||| |
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| T |
8696973 |
aatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatcccatc |
8696874 |
T |
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| Q |
113 |
aaggtggacaatctttccaatggatctaatgattatttat--tatattctacatcatg |
168 |
Q |
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| T |
8696873 |
aaggtgggcaatctttcttatggatctaatgaatatctattatatattctacatcatg |
8696816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 8673613 - 8673655
Alignment:
| Q |
13 |
aatattacttcatacaccacttcactcaaataagaaaaacaag |
55 |
Q |
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| T |
8673613 |
aatattacttcacacaccacttcactcaaataaggaaaacaag |
8673655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 261 - 405
Target Start/End: Original strand, 37740167 - 37740311
Alignment:
| Q |
261 |
acagcattgatagatttcacattgcatcccttaaatccagccattttgatcagatattcccactctttcagggtacgttctttgccatagttagtgtggg |
360 |
Q |
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||||||||||||||||||||| || | | || ||||||||||||||||||| ||||||||| ||||| || || | |||||||||| ||| ||||| | |
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| T |
37740167 |
acagcattgatagatttcacaatgagtgctttgaatccagccattttgatcacatattcccattctttgagtgtcctttctttgccaatgtttgtgtgtg |
37740266 |
T |
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| Q |
361 |
ccatcatcaccgtatctaagactaaccctacatctttatacttgt |
405 |
Q |
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||||||||||| | ||||| | ||||||||| ||||||||||||| |
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| T |
37740267 |
ccatcatcaccatgtctaacattaaccctacgtctttatacttgt |
37740311 |
T |
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