View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_16 (Length: 400)
Name: NF18006_low_16
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 22415456 - 22415813
Alignment:
| Q |
18 |
attttcctagggcattgaagagatatcagtttcaagccacgttgctgtgaagagaataggggaatttgatggtgggctgttcctatgaagaaaaaataca |
117 |
Q |
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| T |
22415456 |
attttcctatggcattgaagagatatcagtttcaagccacgttgctgtgaagagaataggggaatttgatggtgggctgtttctatgaagaaaaaataca |
22415555 |
T |
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| Q |
118 |
aggaggatgaagctgaagtaaaagctgcaaatatgtgttaattgtgggaacactatataaaggactcaacatggcatccattcaaatttgtcacaattga |
217 |
Q |
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| T |
22415556 |
aggagaatgaagctgaagtaaaagctgcaaatatgtgttcattgtgggaacactatataaaggactcaacatggcatccatt------------------ |
22415637 |
T |
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| Q |
218 |
tggtgaaacgagagtatgtttttatttaacttatcttccttttatacaaacacaatacttttgtgtcaatttatttctaatgtaaatatttgttaaacgg |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22415638 |
-ggtgaaacgagagtgtgtttttatttaacttatcttccttttatacaaacacaatacttttgtgtcaatttatttctaatgtaaatatttgtaaaacgg |
22415736 |
T |
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| Q |
318 |
tttgaaattcagttttaaacttttagtgcttgcacttagatatatgcatttttcatactaggaaattattgatgatg |
394 |
Q |
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| T |
22415737 |
tttgaaattcagttttaaacttttagtgcttgcacttagatatatgcatttttcatactaggaaattattgatgatg |
22415813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 30490968 - 30491097
Alignment:
| Q |
117 |
aaggaggatgaagctgaagtaaaagctgcaaatatgtgttaattgtgggaacactatataaaggactcaacatggcatccattcaaatttgtcacaattg |
216 |
Q |
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| T |
30490968 |
aaggaggatgaaggtggagtgagagctgcaaacttgtgttgattgtgggaatactacataaaagacccagcatgacatcaattccaatttgtcacaattg |
30491067 |
T |
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| Q |
217 |
atggtgaaacgagagtatgtttttatttaa |
246 |
Q |
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| T |
30491068 |
atggcaaaaagagggtatgtttttgtttaa |
30491097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 30523493 - 30523622
Alignment:
| Q |
117 |
aaggaggatgaagctgaagtaaaagctgcaaatatgtgttaattgtgggaacactatataaaggactcaacatggcatccattcaaatttgtcacaattg |
216 |
Q |
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||||||||||||| || ||| | ||||||||| |||||| |||||||||| |||| ||||| ||| || |||| |||| |||| ||||||||||| ||| |
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| T |
30523493 |
aaggaggatgaaggtggagtgagagctgcaaacttgtgttgattgtgggaatactacataaaagacccagcatgacatcaattccaatttgtcacagttg |
30523592 |
T |
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| Q |
217 |
atggtgaaacgagagtatgtttttatttaa |
246 |
Q |
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|||| ||| || |||||||||| ||||| |
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| T |
30523593 |
atggcaaaaaaagggtatgtttttgtttaa |
30523622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 30516991 - 30517094
Alignment:
| Q |
117 |
aaggaggatgaagctgaagtaaaagctgcaaatatgtgttaattgtgggaacactatataaaggactcaacatggcatccattcaaatttgtcacaattg |
216 |
Q |
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|||||||||||| ||||||| | ||||| ||| | |||| |||||||||| |||||||||| || || |||| ||||| ||||||||||||||| ||| |
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| T |
30516991 |
aaggaggatgaatctgaagtgagagctgtaaacttttgttcattgtgggaatactatataaaatacccagcatgacatcctttcaaatttgtcacacttg |
30517090 |
T |
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| Q |
217 |
atgg |
220 |
Q |
| |
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|||| |
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| T |
30517091 |
atgg |
30517094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 30507856 - 30507960
Alignment:
| Q |
117 |
aaggaggatgaagctgaagtaaaagctgcaaatatgtgttaattgtggg-aacactatataaaggactcaacatggcatccattcaaatttgtcacaatt |
215 |
Q |
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||||||||||||| || || | ||||||||| |||||| |||||||| || |||| ||||| ||| || |||| |||| |||| |||||||||||||| |
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| T |
30507856 |
aaggaggatgaaggtggagcgagagctgcaaacttgtgttgattgtggggaatactacataaaagacccatcatgacatcaattctaatttgtcacaatt |
30507955 |
T |
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| Q |
216 |
gatgg |
220 |
Q |
| |
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|||| |
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| T |
30507956 |
catgg |
30507960 |
T |
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