View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_17 (Length: 397)
Name: NF18006_low_17
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 47987903 - 47988284
Alignment:
| Q |
1 |
atacctgaaattgtaggtgtagctcctcattggttatcttcctaatataactcattcatggagtgtaagttgtcagttgtcgtatttggtgtctgtatgc |
100 |
Q |
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| T |
47987903 |
atacctgaaattgtaggtgtagctcctcattggttatcttcctgatataactcattcatggagtgtaagttgtccgttgtcgtatttggtgtctgtgtgc |
47988002 |
T |
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| Q |
101 |
gtgtttcatagtattgatagattttttcctataatatgacacatatcattcggtatttgatttgatactcatttttatactatgtagatgtcacaatgtg |
200 |
Q |
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| T |
47988003 |
gtgtttcatagtattgatagattttttcccataatatggcacatatcattcggtatttgatttgatactgatttttatactatgtagatgtcacaatgtg |
47988102 |
T |
|
| Q |
201 |
tatatgcaacgtcgatcttcttcaatttgagtgatatattactattatattattatgtttcagttgtagtatatcatagcagttgtatatttctaataga |
300 |
Q |
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| T |
47988103 |
tatatgcaacgtcgatcttcttcaatttgagtgatatattactattatattattatgtttcagttgcagtatatcatagcagctgtatatttctaataga |
47988202 |
T |
|
| Q |
301 |
tgatgctggttggtcaccaaaaataaatgttgtgacgtgttgtaatctcaaagtcaagtatttgttgcactactaacctttg |
382 |
Q |
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| T |
47988203 |
tgatgctggttggtcaccaaaaataaatgttgtgacgtgttgtaatctcaaagtcaagtatttgttgcactactaacctttg |
47988284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 47977697 - 47977767
Alignment:
| Q |
2 |
tacctgaaattgtaggtgtagctcctcattggttatcttcctaatataactcattcatggagtgtaagttgt |
73 |
Q |
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| T |
47977697 |
tacctggaattgtaggtgtagc-cctcactggctatcttcttgatatgactcattcatggagtgtaagttgt |
47977767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 47978111 - 47978158
Alignment:
| Q |
276 |
atagcagttgtatatttctaatagatgatgctggttggtcaccaaaaa |
323 |
Q |
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| T |
47978111 |
atagcagttgtttatttctaatagacgatgctggttggtaaccaaaaa |
47978158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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