View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_low_18 (Length: 382)

Name: NF18006_low_18
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_low_18
NF18006_low_18
[»] chr1 (9 HSPs)
chr1 (14-366)||(40591000-40591359)
chr1 (232-303)||(31517672-31517743)
chr1 (232-310)||(6292560-6292637)
chr1 (232-303)||(18327078-18327149)
chr1 (267-314)||(32958739-32958786)
chr1 (233-314)||(35017651-35017731)
chr1 (232-301)||(44928125-44928194)
chr1 (263-307)||(37272522-37272566)
chr1 (232-288)||(43942193-43942249)
[»] chr8 (7 HSPs)
chr8 (14-178)||(35572861-35573033)
chr8 (272-314)||(42215221-42215263)
chr8 (266-310)||(14926907-14926951)
chr8 (237-303)||(31884872-31884938)
chr8 (266-314)||(1889056-1889104)
chr8 (233-301)||(24326099-24326167)
chr8 (278-314)||(38874818-38874854)
[»] chr4 (2 HSPs)
chr4 (14-99)||(18595406-18595491)
chr4 (233-314)||(18628474-18628555)
[»] chr2 (11 HSPs)
chr2 (232-303)||(40158785-40158856)
chr2 (232-303)||(4350757-4350828)
chr2 (232-310)||(787399-787477)
chr2 (233-311)||(3458663-3458741)
chr2 (232-310)||(28677584-28677662)
chr2 (268-314)||(30552564-30552610)
chr2 (232-285)||(1801735-1801788)
chr2 (233-310)||(8017502-8017579)
chr2 (266-315)||(35809968-35810017)
chr2 (266-310)||(750835-750879)
chr2 (266-310)||(15370248-15370292)
[»] chr5 (4 HSPs)
chr5 (232-310)||(14331434-14331511)
chr5 (263-303)||(10771820-10771860)
chr5 (234-314)||(38033948-38034028)
chr5 (272-313)||(1084061-1084102)
[»] chr6 (4 HSPs)
chr6 (263-303)||(33080510-33080550)
chr6 (266-310)||(6907496-6907540)
chr6 (232-297)||(32976045-32976110)
chr6 (263-323)||(7351583-7351643)
[»] chr7 (6 HSPs)
chr7 (263-310)||(15321709-15321756)
chr7 (267-310)||(1418521-1418564)
chr7 (232-303)||(3836615-3836686)
chr7 (272-309)||(7513666-7513703)
chr7 (273-309)||(22759269-22759305)
chr7 (272-304)||(28810967-28810999)
[»] chr3 (6 HSPs)
chr3 (248-309)||(36189712-36189773)
chr3 (258-309)||(30657379-30657430)
chr3 (232-310)||(45541638-45541716)
chr3 (266-315)||(48807800-48807849)
chr3 (272-300)||(24625277-24625305)
chr3 (258-310)||(25459555-25459607)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 40591359 - 40591000
Alignment:
Q  14 catcatctccagaggaaataatatgaaattcattctgatgatcttgttgggtcttttctggtgatttccgaacctcctttcttctt--------agattc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  40591359 catcatctccagaggaaataatatgaaattcattctgatgatcttgttgggtcttttctggtgatttccgaacctcctttcttcttttcttctaagattc 40591260  T
Q  106 ttttgacctacctacaaaacaaggattaattccatgaggaaaatgaatgcatgacttaaggcatggtatttcataaataataatacaacaatggaatcaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40591259 ttttgacctacctacaaaacaaggattaattccatgaggaaaatgaatgcatgacttaaggcatggtatttcataaataataatacaacaatggaatcaa 40591160  T
Q  206 ttaactagaaaatatatgaaaataaagtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataatt 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40591159 ttaactagaaaatatatgaaa-taaagtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataatt 40591061  T
Q  306 caatctaaaaacaccttagttgccaagacagagtaaagacaatgatggaaaaactaaaata 366  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40591060 caatctaacaacaacttagttgccaagacagagtaaagacaatgatggaaaaactaaaata 40591000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 31517743 - 31517672
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    ||||| || |||||||||||||||  |||| || ||||| ||||||||||||||||||||||||||||||||    
T  31517743 gtcatgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataa 31517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 6292560 - 6292637
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||||||||||||| | || |||  |||| |||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  6292560 gtcataagctgttttaaaaa-ttctcccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatc 6292637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 18327149 - 18327078
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    |||||||| |||||| ||||||||  ||||  | | ||||||||||||||| ||||| ||||||||||||||    
T  18327149 gtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataa 18327078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 32958739 - 32958786
Alignment:
Q  267 ctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||    
T  32958739 ctcacaagtgcttatgacagtagataagctcaaataagtcaatctaaa 32958786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 35017651 - 35017731
Alignment:
Q  233 tcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    ||||| ||||||||  |||||||  |||| |||||||| ||||| |||||||| || ||||||||||||||  |||||||||    
T  35017651 tcataggctgtttttgtaagttct-ccaaacaatctcacaagtgtttatgccaatagataagctcaaataagccaatctaaa 35017731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 44928194 - 44928125
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaat 301  Q
    |||||||| |||||  ||||||||  |||| |||||| | |||||||||| | |||||||||||||||||    
T  44928194 gtcataagttgtttctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaat 44928125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 37272566 - 37272522
Alignment:
Q  263 caatctcaaaagtgcttatgccagtaaataagctcaaataattca 307  Q
    |||||||| ||||||||| ||||||| ||||||||||| ||||||    
T  37272566 caatctcacaagtgcttaagccagtagataagctcaaacaattca 37272522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 43942249 - 43942193
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagta 288  Q
    |||||||| || |||||||||||||  |||  ||||||| |||||||||||||||||    
T  43942249 gtcataagttggtttgataagttccctcaaataatctcataagtgcttatgccagta 43942193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 35572861 - 35573033
Alignment:
Q  14 catcatctccagaggaaataatatgaaattcattctgatgatcttgttgggtcttttctggtgatttccgaacctcctttcttcttagattct------- 106  Q
    |||||||||||||||||||||||||||  |||| ||| |||| |||||   ||||||||| ||||||  |||||||||||||||||   ||||           
T  35572861 catcatctccagaggaaataatatgaatgtcatcctgctgattttgttctttcttttctgatgattttggaacctcctttcttctttttttcttggcttg 35572960  T
Q  107 -tttgacctacctacaaaacaaggattaattccatgaggaaaatgaatgcatgacttaaggcatggtatttca 178  Q
     |||||| ||||||||||||||  || | ||| |||||||||||||||| ||||||| ||||||| |||||||    
T  35572961 ctttgacgtacctacaaaacaaatataacttctatgaggaaaatgaatgtatgacttcaggcatgatatttca 35573033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 42215263 - 42215221
Alignment:
Q  272 aagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    |||||||||||||||||||||||||||||||| | ||||||||    
T  42215263 aagtgcttatgccagtaaataagctcaaataagttaatctaaa 42215221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 14926951 - 14926907
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||    
T  14926951 tctcacaagtgcttatgccagtaaataagttcaaataagtcaatc 14926907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 31884938 - 31884872
Alignment:
Q  237 aagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    |||||||||| |||||||   |||| || ||||| |||||||||||| |||| ||||||||||||||    
T  31884938 aagctgtttttataagttttcccaaacactctcacaagtgcttatgctagtagataagctcaaataa 31884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 1889104 - 1889056
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    ||||||||||| ||||||||||| |||| ||||||||| || |||||||    
T  1889104 tctcaaaagtgtttatgccagtagataaactcaaataagtccatctaaa 1889056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 24326099 - 24326167
Alignment:
Q  233 tcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaat 301  Q
    |||||| ||||||  ||||| ||  |||| || ||||| ||||||||||||||||| ||||||||||||    
T  24326099 tcataaactgtttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 38874818 - 38874854
Alignment:
Q  278 ttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  38874818 ttatgctagtaaataagctcaaataagtcaatctaaa 38874854  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 18595406 - 18595491
Alignment:
Q  14 catcatctccagaggaaataatatgaaattcattctgatgatcttgttgggtcttttctggtgatttccgaacctcctttcttctt 99  Q
    |||||||||||||||||||||||||||  |||| |||||||| |||||   ||||||||||||||||   ||| ||||||||||||    
T  18595406 catcatctccagaggaaataatatgaatgtcatcctgatgattttgttctctcttttctggtgattttataacttcctttcttctt 18595491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 18628555 - 18628474
Alignment:
Q  233 tcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    ||||||| |||||| ||||| ||  |||| || ||||| ||||| ||||| ||||| |||||||||||||  ||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatctaaa 18628474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 40158785 - 40158856
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    ||||||||||||||| ||||||||| ||||||| ||||| |||| |||||| ||||| ||| ||||||||||    
T  40158785 gtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataa 40158856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 4350757 - 4350828
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    ||||||||||||||| ||||||||   ||| |||||||  ||||||||||| ||||| | ||||||||||||    
T  4350757 gtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataa 4350828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 787399 - 787477
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||||||||||||| ||||||||   ||| || | ||| ||||||||||||||||| ||| |||| |||||| |||||    
T  787399 gtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatccaatc 787477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 3458663 - 3458741
Alignment:
Q  233 tcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatct 311  Q
    ||||||| |||||| ||||| ||  ||| ||| ||| | ||||| |||||||||||| ||||||||||||| |||||||    
T  3458663 tcataagttgttttcataagctctcccattcagtctgacaagtgtttatgccagtaagtaagctcaaataagtcaatct 3458741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 28677662 - 28677584
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||||||||||||| ||||||||  |||| || ||| |  ||| ||||||| |||||||||||||||| || ||||||    
T  28677662 gtcataagctgttttcataagttctcccaaacagtcttagcagtacttatgcaagtaaataagctcaaaaaaatcaatc 28677584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 30552610 - 30552564
Alignment:
Q  268 tcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    |||||||||||||| |||||| |||||||||||||  ||||||||||    
T  30552610 tcaaaagtgcttataccagtagataagctcaaatatgtcaatctaaa 30552564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 1801735 - 1801788
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgcca 285  Q
    ||||||||||||||| ||||||||  |||| |||| ||| ||||||||||||||    
T  1801735 gtcataagctgttttcataagttctcccaaacaatatcacaagtgcttatgcca 1801788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 8017502 - 8017579
Alignment:
Q  233 tcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||||||||||||| ||||||||  ||||  |||| || ||||||||||| || || |||| ||||||||| ||||||    
T  8017502 tcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataacctcaaataagtcaatc 8017579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 35809968 - 35810017
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaaa 315  Q
    ||||| || |||||||||| ||| |||||||||||||| |||||||||||    
T  35809968 tctcacaactgcttatgccggtagataagctcaaataagtcaatctaaaa 35810017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 750835 - 750879
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||||||||||||||| ||| || |||||||||||||| ||||||    
T  750835 tctcaaaagtgcttataccaatagataagctcaaataagtcaatc 750879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 15370292 - 15370248
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||| || |||||||||||||| |||||||||||||| ||||||    
T  15370292 tctcacaaatgcttatgccagtagataagctcaaataagtcaatc 15370248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 14331434 - 14331511
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||||||||||||||| ||||||   |||| ||||||||| |||||||||| ||||| |||||||||||||| ||||||    
T  14331434 gtcataagctgttttg-taagtttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatc 14331511  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 10771860 - 10771820
Alignment:
Q  263 caatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  10771860 caatctcacaagtgcttatgccagtagataagctcaaataa 10771820  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 38034028 - 38033948
Alignment:
Q  234 cataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaa 314  Q
    ||||||||||||| |||| |||  |||| || ||||| | ||||||||||||||| | |||||||||||| ||||| ||||    
T  38034028 cataagctgttttaataacttcttccaaacagtctcacaggtgcttatgccagtagaaaagctcaaataagtcaatttaaa 38033948  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 1084102 - 1084061
Alignment:
Q  272 aagtgcttatgccagtaaataagctcaaataattcaatctaa 313  Q
    ||||||||||| |||||||||| ||||||||| |||||||||    
T  1084102 aagtgcttatgtcagtaaataaactcaaataagtcaatctaa 1084061  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 33080550 - 33080510
Alignment:
Q  263 caatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  33080550 caatctcacaagtgcttatgccagtaaataagctcaaataa 33080510  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 6907540 - 6907496
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||    
T  6907540 tctcaaaagtgcttatgccagcaaataagctctaataagtcaatc 6907496  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 32976045 - 32976110
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctc 297  Q
    ||||||||||||||  ||||| ||  |||| || ||||| |||| |||||||||||||||||||||    
T  32976045 gtcataagctgtttctataagctcttccaaacagtctcacaagtacttatgccagtaaataagctc 32976110  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 7351643 - 7351583
Alignment:
Q  263 caatctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaaaacacctta 323  Q
    |||||||| ||||||||||| ||||| |||| ||||||||| ||||| |||| | ||||||    
T  7351643 caatctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaacagacctta 7351583  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 15321756 - 15321709
Alignment:
Q  263 caatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||||||||||||||||| | |||||||||||||||||||| ||||||    
T  15321756 caatctcaaaagtgcttaagtcagtaaataagctcaaataagtcaatc 15321709  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 310
Target Start/End: Original strand, 1418521 - 1418564
Alignment:
Q  267 ctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  1418521 ctcataagtgcttatgccagtagataagctcaaataagtcaatc 1418564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 3836686 - 3836615
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataa 303  Q
    |||||||||| |||| ||||||||  |||| || | ||| ||||||||| ||||||| ||||||||||||||    
T  3836686 gtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataa 3836615  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 7513666 - 7513703
Alignment:
Q  272 aagtgcttatgccagtaaataagctcaaataattcaat 309  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  7513666 aagtgcttatgccagtagataagctcaaataagtcaat 7513703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 22759269 - 22759305
Alignment:
Q  273 agtgcttatgccagtaaataagctcaaataattcaat 309  Q
    |||||||||||||||| |||||||||||||| |||||    
T  22759269 agtgcttatgccagtagataagctcaaataagtcaat 22759305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 28810999 - 28810967
Alignment:
Q  272 aagtgcttatgccagtaaataagctcaaataat 304  Q
    ||||||||||||||||||||||||| |||||||    
T  28810999 aagtgcttatgccagtaaataagcttaaataat 28810967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 36189712 - 36189773
Alignment:
Q  248 ataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaat 309  Q
    ||||||||| |||| || ||||| |||||||||| | ||||||||||||||||||| |||||    
T  36189712 ataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaat 36189773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 30657379 - 30657430
Alignment:
Q  258 ccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaat 309  Q
    |||| |||||||||||||||||||| ||||| |||| ||||||||| |||||    
T  30657379 ccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataaatcaat 30657430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 45541638 - 45541716
Alignment:
Q  232 gtcataagctgttttgataagttccaccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    ||||||||||||||| ||||||||  | || || ||| | ||||| |||| ||| ||||||||||||||||| ||||||    
T  45541638 gtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaataagtcaatc 45541716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 48807800 - 48807849
Alignment:
Q  266 tctcaaaagtgcttatgccagtaaataagctcaaataattcaatctaaaa 315  Q
    ||||| ||||| |||||| |||||||||||| |||||| |||||||||||    
T  48807800 tctcacaagtgtttatgctagtaaataagcttaaataactcaatctaaaa 48807849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 24625305 - 24625277
Alignment:
Q  272 aagtgcttatgccagtaaataagctcaaa 300  Q
    |||||||||||||||||||||||||||||    
T  24625305 aagtgcttatgccagtaaataagctcaaa 24625277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 25459607 - 25459555
Alignment:
Q  258 ccaatcaatctcaaaagtgcttatgccagtaaataagctcaaataattcaatc 310  Q
    |||| |||||||| |||||||||||| |||  |||||||||||||| ||||||    
T  25459607 ccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatc 25459555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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