View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_2 (Length: 677)
Name: NF18006_low_2
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 667
Target Start/End: Complemental strand, 28928276 - 28927622
Alignment:
| Q |
18 |
tgaagaatggtgctttgtttgcaaagatggtggtaaactgagagtatgtgatttcaggtatatatcttctcaaaacatcaatgcatg----tcattattt |
113 |
Q |
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| T |
28928276 |
tgaagaatggtgctttgtttgcaaagatggtggtgaactgagagtatgtgatttcaggtatatatcttctcaaaacatcaatgcatgcatgttattattt |
28928177 |
T |
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| Q |
114 |
ttgtgaaattaatttcactattgtagtagattttgctctttatgtagtctcagcttaagattttcacaaactttaggtcatggtaattttcatgcatata |
213 |
Q |
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| T |
28928176 |
ttgtgaaattaatttcactattgtagtagattttgctctttatgtagtctcagctgaagattctcacaaactttaggtcatggtaattttcatgcatata |
28928077 |
T |
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| Q |
214 |
t--ttaggtaacttcaacatcaatatgcatgttatcattacgatcatgatctactaacttgatcatagttataagcccttaaaactatttttcaggtctt |
311 |
Q |
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| T |
28928076 |
tatttaggtatcttcaacatcaat--gcatgttatcattacgatcatgatctactaacttgatcatagttataagcccttaaaactatttttcaggtctt |
28927979 |
T |
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| Q |
312 |
caaaacgatgtttggtgttgcatgagtttgtgacatttttagggatcatcacctacgatacccatttaatttactctctttgtttc-aattaatcaatag |
410 |
Q |
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| T |
28927978 |
caaaacgatgtttggtgttgcatgagtttgtgacatttttagggatcatcacctacgatacccatttaatttactctctttgtttcaaattaatcaatag |
28927879 |
T |
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| Q |
411 |
ttttcnnnnnnnncctttaaaattttcttatttactgatagatagtttattaggttttcaatgaaattaatttttaatctaatattttccccaaatgaac |
510 |
Q |
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| T |
28927878 |
ttttcttttttttcctttaaaattttcttatttactgatagatagtttattagcttttcaatgaaattaatttttaatctaatattttccccaaatgaac |
28927779 |
T |
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| Q |
511 |
agtgtgttcatactccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtggtggaaggagtgttcgacatt |
610 |
Q |
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| T |
28927778 |
agtgtgttcatactccaaagtcattacatgaaattgattgagtaacatttatttattgttagtagccctgacacctgtgatggaaggagcattcgacatt |
28927679 |
T |
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| Q |
611 |
gacacatgtgtgtgtgatcatgttcatttaattgactttttcaaacttttacctttg |
667 |
Q |
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| T |
28927678 |
gacacatgtgtgtgagatcatgttcatttaattgactttttcaaacttttacctttg |
28927622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 28904830 - 28904773
Alignment:
| Q |
545 |
tgattgagtaacatttatttattgttagtagccctgacacctgtggtggaaggagtgt |
602 |
Q |
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| T |
28904830 |
tgattgagtaacatttatttattgttagtagcactgacacttgtgatggaaggcgtgt |
28904773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 28905510 - 28905467
Alignment:
| Q |
28 |
tgctttgtttgcaaagatggtggtaaactgagagtatgtgattt |
71 |
Q |
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| T |
28905510 |
tgctttgtttgcaaagatggtggtgaaatgagagtctgtgattt |
28905467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 28938850 - 28938801
Alignment:
| Q |
28 |
tgctttgtttgcaaagatggtggtaaactgagagtatgtgatttcaggta |
77 |
Q |
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| T |
28938850 |
tgctttttctgcaaagatggtggtgaattgagagtctgtgatttcaggta |
28938801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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