View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_21 (Length: 346)
Name: NF18006_low_21
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 7032605 - 7032283
Alignment:
| Q |
17 |
acttaaatgggtgtcattgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggaca |
116 |
Q |
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| T |
7032605 |
acttaaatgggtgtcattgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgaga--caaaacagatggatggaca |
7032508 |
T |
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| Q |
117 |
ctagtcaaccctacacaaagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataa |
216 |
Q |
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| T |
7032507 |
ctagtcaaccctacacagagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataa |
7032408 |
T |
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| Q |
217 |
ggacattcaaattcacaatatcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaattaacagaatgcttatgctggaata |
316 |
Q |
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| T |
7032407 |
ggacattcaaattcacaatatcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaattaacagaatgcttatgctggaata |
7032308 |
T |
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| Q |
317 |
tatatattgtttaaacatgcctttg |
341 |
Q |
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| T |
7032307 |
tatatattgtttaaacatgtctttg |
7032283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 7038287 - 7037997
Alignment:
| Q |
32 |
attgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctaca |
131 |
Q |
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| T |
7038287 |
attgctttgaaggcttgtaagggaaatgcatccactcaaatccagtttctcaagatttttgagagagaaaacagatggatgaacactagtcaaccctaca |
7038188 |
T |
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| Q |
132 |
caaagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattca |
231 |
Q |
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| T |
7038187 |
cagaattggaggtccaagactgcgagacttgtggcctttgaaaagtctggtagctctgttaggagtgtggatgaatggagtataaggacattcaaattca |
7038088 |
T |
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| Q |
232 |
caatatcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatct-gaattaacagaatgcttatgctggaatatatat |
321 |
Q |
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| T |
7038087 |
caagatcctgtttcatttagaaccaatcaagacaagacttgtcagccaattgaatctggatttaactaagtgcttatgttggaatatatat |
7037997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 7073741 - 7073985
Alignment:
| Q |
32 |
attgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctaca |
131 |
Q |
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| T |
7073741 |
attgctttgaaggcttttcagggaactgcatccactcagatccaatttctcaagatttttgagagagaaaacagatggatggacactagtcaaccctaca |
7073840 |
T |
|
| Q |
132 |
caaagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattca |
231 |
Q |
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| T |
7073841 |
caagattggaggtccaatactgcaagatttgtggcctttgaaaagtctggtagctccgttagaagtgcggatgaagagagtataaggacattcaaattca |
7073940 |
T |
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| Q |
232 |
caatatcctgttacatttagaaccaaccaagacaagatttgtgag |
276 |
Q |
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| T |
7073941 |
caatatcctgttacatttataaccaaccaagacaagaattgtgag |
7073985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 32 - 322
Target Start/End: Complemental strand, 7025213 - 7024922
Alignment:
| Q |
32 |
attgctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctaca |
131 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
7025213 |
attgctttgaaggcttgtaagggaaatgcatccactcagatccagtttcttaagctttttcagagagaaaacagatggatggacactagtcaaccctaca |
7025114 |
T |
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| Q |
132 |
caaagtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattca |
231 |
Q |
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| T |
7025113 |
cagaattggaggtccattactgcaagacttgtggcctttgaaagatctggtagctctgttaaaagtgtggatgaatggagtataaggtcattcaaattca |
7025014 |
T |
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| Q |
232 |
caatatcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaa-ttaacagaatgcttatgctggaatatatata |
322 |
Q |
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||| |||||||| ||||||||| | |||| |||| | ||||| |||||||||||| || |||| | ||||| ||||||||||||||||| |
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| T |
7025013 |
caagatcctgttccatttagaattagccaacacaaaacatgtgaaccaattgaatctaaatttaattgcatgctaatgctggaatatatata |
7024922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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