View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_22 (Length: 342)
Name: NF18006_low_22
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 8107413 - 8107636
Alignment:
| Q |
16 |
gattatcagttgttagtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctg |
115 |
Q |
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| T |
8107413 |
gattatcgattgttagtagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacacaattggcataaatcaattttctg |
8107512 |
T |
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| Q |
116 |
atcgaactgaagaagagttgtctgtatcatgtgtagaggacgacgacaactactaatggtattttcaatgaaaga---agatcgttacataggttgtttc |
212 |
Q |
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| T |
8107513 |
attgaactgaagaagagttgtctgtatcatgtgtagaggacgacgacaattacgaatggtattttcaatgaaagaattagatcgtcacatagcgtgtttc |
8107612 |
T |
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| Q |
213 |
tgatctacaaaataaactcaaaac |
236 |
Q |
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| T |
8107613 |
tgatctacaaaataaactcaaaac |
8107636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 8112058 - 8112286
Alignment:
| Q |
16 |
gattatcagttgttagtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctg |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8112058 |
gattatcgattgttagtagtattttaaatatctttctctttctctgtaatgaattccacaggtaatcacagttacacaattggcataaatcaattttctg |
8112157 |
T |
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| Q |
116 |
atcgaactgaagaagagttgtctgtatcatgtgtagag---gacgacgacaactactaatggtattttcaatgaaaga---agatcgttacataggttgt |
209 |
Q |
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| T |
8112158 |
atcgaactgaagaagagttgtctgtatcatgtgtagaggacgacgacgacaactacgaatggtattttcaatgaaagaattagatcgtcacatagcgtgt |
8112257 |
T |
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| Q |
210 |
ttctgatctacaaaataaactcaaaacgg |
238 |
Q |
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| T |
8112258 |
ttctgatctataaaataaactcaaaacgg |
8112286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 8093768 - 8093973
Alignment:
| Q |
31 |
gtagtattttaaatatctttctctttctctgtaatgaatttcacaggtaaccacagttacacaattggcataaatcaattttctgatcgaactgaagaag |
130 |
Q |
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| T |
8093768 |
gtagtattttaagtatctttatctttcattgtaatgaatttcgcaggtaatcacagttacataattggcataaattaattttctgatttaactaaagaag |
8093867 |
T |
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| Q |
131 |
agttgtctgtatcatgt---gtagaggacgacgacaactactaatggtattttcaatgaaagaagatcgttacataggttgtttctgatctacaaaataa |
227 |
Q |
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| T |
8093868 |
agtcatctgtatcatgtttcatagaggacgaagacgacaaaaaa---tattttcaatgaaataagatcgtcgcatagcatgttcctgatctacaaaataa |
8093964 |
T |
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| Q |
228 |
actcaaaac |
236 |
Q |
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||||||||| |
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| T |
8093965 |
actcaaaac |
8093973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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