View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_24 (Length: 317)
Name: NF18006_low_24
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_24 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 24031569 - 24031288
Alignment:
| Q |
20 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatcgaaacataagtgttacaacccaaagatatgataggtaaagcaagataca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24031569 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatcgaaacataagtgttacaacccaaaaatatgataggtaaagcaagataca |
24031470 |
T |
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| Q |
120 |
cagcgtagcatctaactaatcgcctcaccacaaatagctaaacaaacacttaagtttgtactgcacatacacataataaaggattagataatgcaatcat |
219 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24031469 |
cagcgtagcatctagctaatcgcctcaccacaaatagctaaacaagcacttaagtttgtactgcacatacacataataaaggattagataatgcaatcat |
24031370 |
T |
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| Q |
220 |
aaaataaataactaagtacaaggaataccaaacacttggtgaaatagaagcattaaacttcaagcacaagtatacaccctat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24031369 |
aaaataaataactaagtacaaggaataccaaacacttggtgaaatagaagcattaaacttcaagcataagtatacaccctat |
24031288 |
T |
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Target: scaffold0037 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 14806 - 14756
Alignment:
| Q |
20 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
70 |
Q |
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| T |
14806 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
14756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17038064 - 17038114
Alignment:
| Q |
20 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038064 |
caaaagacataaatattagcaatgtcctaaacagtttgaaatactcaaatc |
17038114 |
T |
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