View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_25 (Length: 316)
Name: NF18006_low_25
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 41277656 - 41277829
Alignment:
| Q |
13 |
aatatcggtacggttgcattcattctcttggctacaatcaacactttcaatcggaatcgacaacgaagaagcctctcctccttcaattctgcggcgtttg |
112 |
Q |
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| T |
41277656 |
aatatcggtacggttgcattcattctcttggctacaatcaacactttcaatcggaatcgacaacgaagaagcctctcctccttcaattctgcggcgtttg |
41277755 |
T |
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| Q |
113 |
tttatctcgtcgccgggaataacacttacttcgtcggatcgggaaaccctagacgacggcacatcgggaacata |
186 |
Q |
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| T |
41277756 |
tttctctcgtcgccgggaataacacttacttcgtcggatcgggaaaccctagacgacggcacatcgggaacata |
41277829 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 236 - 299
Target Start/End: Original strand, 41277879 - 41277942
Alignment:
| Q |
236 |
ccggagtggccgtttagtactaaattgatgaatctgggatctgctccggcgtccatgagttgtt |
299 |
Q |
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| T |
41277879 |
ccggagtggccgtttaggactaaattaatgaatctgggatctgctccggcgtccatgagttgtt |
41277942 |
T |
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