View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_26 (Length: 311)
Name: NF18006_low_26
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 35428819 - 35429088
Alignment:
| Q |
25 |
atatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
124 |
Q |
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|||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35428819 |
atatatatttcaaaaattaatactttcctgatcgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35428918 |
T |
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| Q |
125 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35428919 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaatcatcaccaaaaggcaaattac |
35429018 |
T |
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| Q |
225 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429019 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
35429088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 294
Target Start/End: Original strand, 35419686 - 35419949
Alignment:
| Q |
25 |
atatatatatcaaaatttaatattttcctgattgaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
124 |
Q |
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|||||||| |||| | |||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35419686 |
atatatatttcaataattaatacttccctgatagaaggaaatctcaaaatattgaagaggtgtgatgaccggatgtaatctcatcagataaaaataaatt |
35419785 |
T |
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| Q |
125 |
tggacaaaacattattagggttgtaaacctgcttaaactcttccaaaattttgcttataaatgcattgtataacaaaaccatcaccaaaaggcaaattac |
224 |
Q |
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|||||||||||||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| | ||||||||||||||| |
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| T |
35419786 |
tggacaaaacattattagggttat-aacctacttaaactcttccaaaattttgcctataaatgcattgtatagcaaaatcatgagcaaaaggcaaattac |
35419884 |
T |
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| Q |
225 |
ttttctacttctacctcatacttacttcaaagcttgatcactcattcatggagtcctcctcctttgacct |
294 |
Q |
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| T |
35419885 |
--ttctaagtgtgtctccaa--tcctt-aaagcttgatcactcatacatggagtcctcctcctttgacct |
35419949 |
T |
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