View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_28 (Length: 299)
Name: NF18006_low_28
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 5331511 - 5331248
Alignment:
| Q |
21 |
attgtatgcatttccttttgaataggtgaatgacnnnnnnnnnnttgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttc |
120 |
Q |
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| T |
5331511 |
attgtatgcatttccttttgaataggtgaatgacaaaaaaaaa-ttgtacctcaacaatgaaagtgtggattgtgctgccaatttgagctatcaattttc |
5331413 |
T |
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| Q |
121 |
cagagaatgagtcattaatgcatggtaacatcgaacccaaactactgttctgtgggttgttctcaaagtcctcaaatgcagagcatgcatcatttgcaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331412 |
cagagaatgagtcattaatgcatggtaacatcgaacccaaactactgttctgtgggttgttctcaaagtcctcaaatgcagagcatgcatcatttgcaaa |
5331313 |
T |
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| Q |
221 |
actgcattcacaatgaaaagagagtttgatcactacaatctcagttacgaatactctcttcggtc |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5331312 |
actgcattcacaatgaaaagagagtttgattactacaatctcagttacgaatactctcttcggtc |
5331248 |
T |
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