View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_29 (Length: 295)
Name: NF18006_low_29
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 30652808 - 30652545
Alignment:
| Q |
21 |
ctcgagcaacgaccctcctcaatgagtggaaggctacacaaggcattagaagagagggtggcgcacctagaactgtgaatcaattggaaccaatacgcca |
120 |
Q |
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| T |
30652808 |
ctcgagcaacgaccctcctcaatgagtggaagcctacacaaggcattagaagagagggtggcgcacctagaactgtgaatcagcagaaaccaatacgcca |
30652709 |
T |
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| Q |
121 |
agaggttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggtattaagtatgtg |
220 |
Q |
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| T |
30652708 |
agaggttgttcgataggaaaagccagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggtatt-agtatgtg |
30652610 |
T |
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| Q |
221 |
tatctgggatgctgccgtggagtatgtacttggaagaaccgattggttttcacccctttgtgatg |
285 |
Q |
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| T |
30652609 |
tatctgggatgatgtcggggagtatgtacttggaagaaccgattggttttcacccctttgtgatg |
30652545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 14857521 - 14857257
Alignment:
| Q |
20 |
gctcgagcaacgaccctcctcaatgagtggaaggctacacaaggcattagaagagagggtggcgcacctagaactgtgaatcaattggaaccaatacgcc |
119 |
Q |
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| T |
14857521 |
gctcgagcaacgaccctccttgatgagtggaaggccgcacaatgcataagaagagagggaggtgcacctagagctgtgaatcagccggagccaattcgac |
14857422 |
T |
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| Q |
120 |
aagaggttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggtattaagtatgt |
219 |
Q |
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| T |
14857421 |
aagagactattcgatggcaaaagccagcaagaggtcgctacaaatgcaatatagatgcttccttttcttcttcacttaatcgtgtgggtctt-ggtatgt |
14857323 |
T |
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| Q |
220 |
gtatctgggatgctgccgtggagtatgtacttggaagaaccgattggttttcacccctttgtgatg |
285 |
Q |
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| ||| | |||| ||||| |||||||| |||| ||||| ||||||||||| ||||||||||||| |
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| T |
14857322 |
gcatccgagatgatgccggagagtatgttcttgcaagaatcgattggttttatcccctttgtgatg |
14857257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 8321564 - 8321444
Alignment:
| Q |
125 |
gttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttccttttcttgttcacttaatcatgtgggtattaagtatgtgtatc |
224 |
Q |
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|||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||| ||||||| |||| |||||| ||| |||||| ||||||||||| |
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| T |
8321564 |
gttgttcgatggaaaaagtcagcaagaggtcgatacaaatgtaacataaatgtttcattttcttcttcaattaatcgtgtcggtatt-ggtatgtgtatc |
8321466 |
T |
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| Q |
225 |
tgggatgctgccgtggagtatg |
246 |
Q |
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| T |
8321465 |
cgggatgatgcgggggagtatg |
8321444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 10215086 - 10215150
Alignment:
| Q |
119 |
caagaggttgttcgataggaaaagctagcaaaaggtcgatacaaatgtaacatagatgtttcctt |
183 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
10215086 |
caagaggttgttcgatgggaaaagctagcaaaaggccgatacaaatgtaatatagatgattcctt |
10215150 |
T |
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