View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_3 (Length: 604)
Name: NF18006_low_3
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 599
Target Start/End: Original strand, 38761619 - 38762204
Alignment:
| Q |
19 |
gctcatagatttaacaatagaatgataaaaagttacgtgagtcata-tnnnnnnnnntaggccatcaatttggtgatacaacaaatccatccatgtacat |
117 |
Q |
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| T |
38761619 |
gctcatagatttaacaatagaatgataaaaagatacgtgagtcataataaaaaaaaataggccatcaatttggtgatacaacaaatccatccatgtacat |
38761718 |
T |
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| Q |
118 |
aattgattgcatgagattaattagattagcacgtcaaaacaacgtagaggtgtggtcccctaagtcctaatatgtataataataaagtaaagtagcatat |
217 |
Q |
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| T |
38761719 |
aattgattgcatgagattaattagattagcacgtcaaaacaacgtagaggtgtggtcccctaagtcctaacatgtataataataaagtaaagtagcatat |
38761818 |
T |
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| Q |
218 |
atatatggtcttcaccacacacgtccacattatattatatatagcatacttggtgagccaattatcaatgtgttactactcactcactcaccagaagaac |
317 |
Q |
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| T |
38761819 |
atat--ggtcttcaccacacacgtccacattatattatatatagcatacttggtgagccaattatcaatgtgttactactcactcactcactagaagaac |
38761916 |
T |
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| Q |
318 |
ctttgttatcaatat----ctcatcatatattagtaattgatttcaccactcaccagctaaagatcacacaccttttata--tataatttaggtgatcta |
411 |
Q |
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| T |
38761917 |
ctttgttatcaatatatatctcatcatatattagtaattgatttcaccactcaccagctaaagatcgcacaccttttatatatataatttaggtgatcta |
38762016 |
T |
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| Q |
412 |
ttgatcataaaagcaaatcagctagtaagatgaaaataaacaatccatatttggttgtggtaatcatacaagccatatatgctgctatgtttcttctgtc |
511 |
Q |
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| T |
38762017 |
ttgatcataaaagcaaatcagctagtaagatgaaaagaaacaatccatatttggttgtggtaatcatacaagccatatatgctgctatgtttcttctgtc |
38762116 |
T |
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| Q |
512 |
aaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaatctgcagctactatttttctcacaccctttgct |
599 |
Q |
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| T |
38762117 |
aaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaatctgcagctactatttttctcacaccttttgct |
38762204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 43620913 - 43620982
Alignment:
| Q |
497 |
tatgtttcttctgtcaaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaa |
566 |
Q |
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| T |
43620913 |
tatgtttctactctcaaaagctgcatttgatcatggcatcaacaatttcatctttgtgttctatagacaa |
43620982 |
T |
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