View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18006_low_31 (Length: 277)

Name: NF18006_low_31
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18006_low_31
NF18006_low_31
[»] chr1 (2 HSPs)
chr1 (22-252)||(646098-646343)
chr1 (73-109)||(47053379-47053415)
[»] chr4 (9 HSPs)
chr4 (51-110)||(2635110-2635169)
chr4 (51-110)||(22683810-22683869)
chr4 (51-109)||(25318994-25319052)
chr4 (51-109)||(33560651-33560709)
chr4 (51-109)||(35065010-35065068)
chr4 (59-109)||(32818450-32818500)
chr4 (47-108)||(9134553-9134614)
chr4 (51-107)||(26617709-26617765)
chr4 (49-105)||(33347254-33347310)
[»] chr3 (4 HSPs)
chr3 (58-109)||(50321838-50321889)
chr3 (51-109)||(54596765-54596823)
chr3 (51-109)||(7717453-7717511)
chr3 (51-109)||(48410892-48410950)
[»] chr8 (3 HSPs)
chr8 (51-109)||(42455859-42455917)
chr8 (51-98)||(5997374-5997421)
chr8 (62-109)||(37684363-37684410)
[»] chr6 (7 HSPs)
chr6 (51-109)||(26280552-26280610)
chr6 (51-109)||(35098538-35098596)
chr6 (62-109)||(2234294-2234341)
chr6 (51-105)||(6654174-6654228)
chr6 (51-105)||(7952793-7952847)
chr6 (60-105)||(2008586-2008631)
chr6 (51-87)||(2002567-2002603)
[»] chr7 (3 HSPs)
chr7 (51-100)||(12306924-12306973)
chr7 (51-109)||(5489926-5489984)
chr7 (51-109)||(45004967-45005025)
[»] chr2 (6 HSPs)
chr2 (45-101)||(7630357-7630413)
chr2 (61-109)||(31453340-31453388)
chr2 (57-105)||(32777923-32777971)
chr2 (48-109)||(680357-680418)
chr2 (51-87)||(10280684-10280720)
chr2 (51-87)||(15928536-15928572)
[»] scaffold0168 (1 HSPs)
scaffold0168 (51-110)||(31773-31832)
[»] chr5 (3 HSPs)
chr5 (58-109)||(27374371-27374422)
chr5 (51-109)||(29922841-29922899)
chr5 (51-87)||(370812-370848)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 646098 - 646343
Alignment:
22 gtgtatgtttggttccaaagtggccatatttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgattacgagtgaagct 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
646098 gtgtatgtttggttccaaagtggtcatatttgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgattatgagtgaagct 646197  T
122 ataatttatatagctgtatttaaacacaaacc----------------cactttagtcggaatcaattatcgcaaaatcaattattgtca-cgcaaaacc 204  Q
    ||||||  ||||||||||||||||||||||||                ||||||||||  ||||||||||| |||||||||||||||||| |||||||||    
646198 ataatt--tatagctgtatttaaacacaaacccactttacctttaactcactttagtcaaaatcaattatctcaaaatcaattattgtcaccgcaaaacc 646295  T
205 aaacatttgtgtatatgtgtatttctttactttgattttgatagttgc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
646296 aaacatttgtgtatatgtgtatttctttactttgattttgatagttgc 646343  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 47053379 - 47053415
Alignment:
73 tttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||| ||||||||| |||||||||||||||||||||    
47053379 ttttttagtagaattgattttgcctccagaattgatt 47053415  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 2635110 - 2635169
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatta 110  Q
    |||||| ||||||||||| ||| |||| ||||||| | ||||||||||||||||||||||    
2635110 ttgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgatta 2635169  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 22683810 - 22683869
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatta 110  Q
    |||||| ||||||||| | ||||||||||||| |||| ||||||||||||||||| ||||    
22683810 ttgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaatta 22683869  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 25318994 - 25319052
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||| | | |||||||||| |||||| ||||||||||||||    
25318994 ttgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgatt 25319052  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 33560709 - 33560651
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||| | | |||||||||| |||||||||| ||||||||||    
33560709 ttgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgatt 33560651  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35065010 - 35065068
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||||||||||| |||||||| ||| |||||||||| |||||||||| | ||||||||    
35065010 ttgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgatt 35065068  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 32818500 - 32818450
Alignment:
59 gacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||| |||||||  ||| |||||||||| |||||||||||||||||||||    
32818500 gacatatttggtttctttcgagtagaattgattttgcctccagaattgatt 32818450  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 9134553 - 9134614
Alignment:
47 atatttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgat 108  Q
    |||||||||| |||||||||| |||||| | |||| ||||| ||||| | ||||||||||||    
9134553 atatttgattttgacatgtttagttgttatcgagtggaattgattttacttccagaattgat 9134614  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 26617765 - 26617709
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattga 107  Q
    |||||| |||||||||||| || |||| | ||||||| |||||||||||| ||||||    
26617765 ttgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 33347310 - 33347254
Alignment:
49 atttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaatt 105  Q
    ||||||||||||||| |||||| | ||||||||| || | |||||||||| ||||||    
33347310 atttgattatgacatatttggtggcttttgagtataagtaattttgcctctagaatt 33347254  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 50321889 - 50321838
Alignment:
58 tgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||||||||||||||||| ||||||||| |||||| ||| ||||||||||    
50321889 tgacatgtttggttgttttttagtagaattaattttgtctcaagaattgatt 50321838  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 54596765 - 54596823
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||||||||||||||||||||||||  ||||||||| ||| |||||||| || |||||    
54596765 ttgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 7717511 - 7717453
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||  |   |||||||||| |||||||||||||||||||||    
7717511 ttgattttgacatgtttggttcctccagagtagaattgattttgcctccagaattgatt 7717453  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 48410950 - 48410892
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||| ||||||| ||| ||| |||||||||| |||||||||||| ||||||||    
48410950 ttgattctgagatgtttgattgctttcgagtagaattgattttgcctccaaaattgatt 48410892  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 42455859 - 42455917
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||| |||||||||| ||| ||| |||||||| ||||||||    
42455859 ttgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 42455917  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 5997421 - 5997374
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctc 98  Q
    |||||| |||||||||||| |||||||||||| |||| ||||||||||    
5997421 ttgattttgacatgtttggatgtttttgagtaaaattgattttgcctc 5997374  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 37684363 - 37684410
Alignment:
62 atgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||||||||||| | |||||||||| |||||| ||||||||||||||    
37684363 atgtttggttgttgtggagtagaattgattttgtctccagaattgatt 37684410  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 26280552 - 26280610
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||| ||||||||  |||||||| |||||||||| ||||||||||    
26280552 ttgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgatt 26280610  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 35098596 - 35098538
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||  |||||||||||||| ||||||| ||||| |||||||    
35098596 ttgattttgacatgtttggttacttttgagtagaattgattttgcttccaggattgatt 35098538  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 2234341 - 2234294
Alignment:
62 atgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||||||||| | |||||||||||| ||||||||||| |||||||||    
2234341 atgtttggttgctcttgagtagaattgattttgcctcctgaattgatt 2234294  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 6654228 - 6654174
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaatt 105  Q
    ||||||||| |||||||||||| | |||||||||||| ||||| ||| |||||||    
6654228 ttgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaatt 6654174  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 7952847 - 7952793
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaatt 105  Q
    |||||||||||||||||| ||| |||||||| || || |||||||||||| ||||    
7952847 ttgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatt 7952793  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 2008631 - 2008586
Alignment:
60 acatgtttggttgtttttgagtagaatttattttgcctccagaatt 105  Q
    ||||||||||||| |||  ||||||||| |||||||||||||||||    
2008631 acatgtttggttgctttctagtagaattgattttgcctccagaatt 2008586  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 2002603 - 2002567
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatt 87  Q
    |||||| ||||||||||||||||||| ||||||||||    
2002603 ttgattttgacatgtttggttgttttcgagtagaatt 2002567  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 12306924 - 12306973
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctcca 100  Q
    |||||| ||||||||||||||| | |||||||||||| ||||||||||||    
12306924 ttgattttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 5489984 - 5489926
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| | ||||||||||||| |  ||||||||||| |||||||||||| ||||||||    
5489984 ttgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgatt 5489926  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 45004967 - 45005025
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||| | | || ||||||| ||||||||| |||||||||||    
45004967 ttgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgatt 45005025  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 7630357 - 7630413
Alignment:
45 ccatatttgattatgacatgtttggttgtttttgagtagaatttattttgcctccag 101  Q
    ||||| |||||| ||||||||||||||| |||  ||||||||| |||||||||||||    
7630357 ccataattgattttgacatgtttggttgctttcaagtagaattgattttgcctccag 7630413  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 31453340 - 31453388
Alignment:
61 catgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||||||||| | ||||||||||||||||||||||| | ||||||||    
31453340 catgtttggttgatgttgagtagaatttattttgcctctataattgatt 31453388  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 32777923 - 32777971
Alignment:
57 atgacatgtttggttgtttttgagtagaatttattttgcctccagaatt 105  Q
    |||||||||||||||||||| | |||||||| |||||||||||| ||||    
32777923 atgacatgtttggttgttttcgtgtagaattgattttgcctccataatt 32777971  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 680418 - 680357
Alignment:
48 tatttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    ||||| ||| |||||||||| |||| ||| || ||||| | |||||||||||||||||||||    
680418 tattttattttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgatt 680357  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 10280684 - 10280720
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatt 87  Q
    ||||||||||||||||| ||||||||||| |||||||    
10280684 ttgattatgacatgttttgttgtttttgaatagaatt 10280720  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 15928572 - 15928536
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatt 87  Q
    |||||| ||||||||||||||||| ||||||||||||    
15928572 ttgattttgacatgtttggttgttgttgagtagaatt 15928536  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 31773 - 31832
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatta 110  Q
    |||||| ||||||||||||||||| | ||||| |||| ||| |||||||| |||||||||    
31773 ttgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgatta 31832  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 27374422 - 27374371
Alignment:
58 tgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||||||||||||||||  ||||||||| |||||||||  ||||||||||    
27374422 tgacatgtttggttgttttcaagtagaattaattttgccttaagaattgatt 27374371  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 29922841 - 29922899
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatttattttgcctccagaattgatt 109  Q
    |||||| ||||||||||||||||| | ||| |||||| |||||| ||| ||||||||||    
29922841 ttgattttgacatgtttggttgttctcgagcagaattgattttgtctcaagaattgatt 29922899  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 370848 - 370812
Alignment:
51 ttgattatgacatgtttggttgtttttgagtagaatt 87  Q
    |||||||||| |||||||||||||||| |||||||||    
370848 ttgattatgatatgtttggttgtttttaagtagaatt 370812  T

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