View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_39 (Length: 211)
Name: NF18006_low_39
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_39 |
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| [»] scaffold0408 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 2368906 - 2369079
Alignment:
| Q |
18 |
gatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
2368906 |
gatatgatgtaagaaaaggaacacggttaattttgaatcttagaaagattcacactgatccaaatatttggtcaaatccattggaattcaaaccagagcg |
2369005 |
T |
|
| Q |
118 |
gtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2369006 |
gtttcttactacccataaagacgttgatgttagaggtcatcattttgagctattaccatttggaggtggtagaa |
2369079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 2363160 - 2363333
Alignment:
| Q |
18 |
gatatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcg |
117 |
Q |
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|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||| | |
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| T |
2363160 |
gatatgatgtaagaaatggaacacgattaattttgaatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaaccggagag |
2363259 |
T |
|
| Q |
118 |
gtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
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||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2363260 |
gtttcttacaacgcataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaa |
2363333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 2351535 - 2351702
Alignment:
| Q |
24 |
atgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttct |
123 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||| || ||||||||||| ||||||| |
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| T |
2351535 |
atgttagaaaaggaactcggttaatgctaaatctttggaagattcaaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttct |
2351634 |
T |
|
| Q |
124 |
tactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
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||| || ||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
2351635 |
taccactcataaagttgttgatgttagaggtaatcattttgaactactaccatttggaagtggtagaa |
2351702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 2340110 - 2340249
Alignment:
| Q |
52 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
151 |
Q |
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|||||||||||||||||| || ||||| | ||||||| |||||||||| || ||||||||||| ||||| |||| || ||||||| ||||||||||||| |
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| T |
2340110 |
aaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccactcataaagctgttgatgttaga |
2340209 |
T |
|
| Q |
152 |
ggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||| |
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| T |
2340210 |
ggtaatcattttgaactattaccatttggaagtggtagaa |
2340249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 14711465 - 14711333
Alignment:
| Q |
59 |
tggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatc |
158 |
Q |
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|||||||| || |||||||| | ||||||| | ||||||||||| |||||||| ||| | |||||||| || |||||||||||||||||||||||||||| |
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| T |
14711465 |
tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc |
14711366 |
T |
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| Q |
159 |
attttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
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|||||||||| |||||||||||| |||| |||| |
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| T |
14711365 |
attttgagcttttaccatttggaagtggaagaa |
14711333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 2307429 - 2307568
Alignment:
| Q |
52 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
151 |
Q |
| |
|
||||||||||| |||| |||| ||||| ||| ||||| |||||||||| || ||||||||||| | |||||||| || |||||||||||||||||||| |
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| T |
2307429 |
aaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttagg |
2307528 |
T |
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| Q |
152 |
ggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
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|||| | |||||| |||||| ||||||||| ||||||||| |
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| T |
2307529 |
ggtagtaattttgtgctattgccatttggaagtggtagaa |
2307568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 2261413 - 2261274
Alignment:
| Q |
52 |
aaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttaga |
151 |
Q |
| |
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|||||||||||| ||||| || ||||||| | ||||| |||||||||| || ||||||||||| | |||||||| || || ||| ||||||||| | |
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| T |
2261413 |
aaatctttggaaaattcaaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgccaag |
2261314 |
T |
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| Q |
152 |
ggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
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||| | ||||||||| | |||||||||||| ||||||||| |
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| T |
2261313 |
ggtcaacattttgagttgttaccatttggaagtggtagaa |
2261274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 14753512 - 14753404
Alignment:
| Q |
83 |
gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag |
182 |
Q |
| |
|
|||||| | ||||||||||| ||||| || | | | |||||||| || ||||||||||||||||||| ||| ||||||||||| | |||||||||||| |
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|
| T |
14753512 |
gtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaa |
14753413 |
T |
|
| Q |
183 |
gtggtagaa |
191 |
Q |
| |
|
|||| |||| |
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|
| T |
14753412 |
gtggaagaa |
14753404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 2357847 - 2358018
Alignment:
| Q |
20 |
tatgatgtaagaaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggt |
119 |
Q |
| |
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|||||||| | ||||||||| || |||| |||||||||||||| || || || || | ||||||||||| |||||||| | || |||||||| | | |
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| T |
2357847 |
tatgatgtcataaaaggaactcgactaatcttaaatctttggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaaccagaaagat |
2357946 |
T |
|
| Q |
120 |
ttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
|
|||||| || ||||||||||||||||| |||| ||| |||||| | |||||||||||| ||||||||| |
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| T |
2357947 |
ttcttaacacttataaagatgttgatgttcgagggtgtcactttgagttgttaccatttggaagtggtagaa |
2358018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 2297361 - 2297469
Alignment:
| Q |
83 |
gtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggag |
182 |
Q |
| |
|
||||||||||||||||| ||||| ||||| || |||||||||| || | |||||||||||| || | ||| | |||||||| | || ||||||||| |
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| T |
2297361 |
gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa |
2297460 |
T |
|
| Q |
183 |
gtggtagaa |
191 |
Q |
| |
|
|||| |||| |
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|
| T |
2297461 |
gtggaagaa |
2297469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 4305893 - 4306031
Alignment:
| Q |
53 |
aatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagag |
152 |
Q |
| |
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||||| |||||||| || |||||||| || ||||||| ||| || || || ||||||||||| |||||||||||||| ||||||| ||||||||||| | |
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| T |
4305893 |
aatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaaccagaacggtttcttactactcataaaggtgttgatgttaagg |
4305992 |
T |
|
| Q |
153 |
gtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
|
|| ||||||||||| |||||||||||||| ||||||||| |
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| T |
4305993 |
gtcatcattttgagttattaccatttggaagtggtagaa |
4306031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 5804395 - 5804235
Alignment:
| Q |
31 |
aaaaggaacacggttaattttaaatctttggaagattcacactgatccaaatgtttggtcagatccattggaattcaaaccagagcggtttcttactacc |
130 |
Q |
| |
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||||||||| || ||||| ||||||||||||||| || || |||| | ||||||| || ||||||| || || || ||||| |||||||||| || |
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| T |
5804395 |
aaaaggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagccagaaaggtttcttacaact |
5804296 |
T |
|
| Q |
131 |
cataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
5804295 |
cataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaa |
5804235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 560 - 659
Alignment:
| Q |
92 |
gatccattggaattcaaaccagagcggtttcttactacccataaagatgttgatgttagaggtaatcattttgagctattaccatttggaggtggtagaa |
191 |
Q |
| |
|
||||||||||| ||||| || | | | |||||||| || ||||||||||||||||||| ||| ||||||||||| | |||||||||||| |||| |||| |
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| T |
560 |
gatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatcattttgagtttttaccatttggaagtggaagaa |
659 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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