View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18006_low_40 (Length: 207)
Name: NF18006_low_40
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 12348172 - 12348004
Alignment:
| Q |
17 |
caaaggacatttgactcagaaataattaaagaatatttatatgaatgagggaaaggaaatttgagatggggcacacctaaaagcctgccaagtgctatag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12348172 |
caaaggacatttgactcagaaataattaaagaatatttatatgaatgagggaaaggaaatttgagatggggcacacctaaaagcctgccaagtgctatag |
12348073 |
T |
|
| Q |
117 |
aacttgcatgttcatgtgctatagcttccaattatttttgtgtatttaaaaaattataccattcatgca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12348072 |
aacttgcatgttcatgtgctatagcttccaattatttttgtgtatttaaaacattataccattcatgca |
12348004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University