View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_5 (Length: 579)
Name: NF18006_low_5
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 156 - 561
Target Start/End: Original strand, 11230899 - 11231304
Alignment:
| Q |
156 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
255 |
Q |
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| T |
11230899 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
11230998 |
T |
|
| Q |
256 |
gctaagcaacgtaaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaa |
355 |
Q |
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| T |
11230999 |
gctaagcaacctaaccagttgtgccattttgaaaacatccttcatctactttgatccttgttgtgccaatgttcggctgctccaagatttctggctctga |
11231098 |
T |
|
| Q |
356 |
aactatggttggcttcagctttgagggattagcgttaaaaaactctgcagaaaatctggattcctccatagcgatggacacaacagaaaggtgttttgtt |
455 |
Q |
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| T |
11231099 |
aactatggttggcttcggctttgagggattagcgttaaaaaactctgcggaaaatctggattcctccatagcgatggacacaccagaaaggtgttttgtt |
11231198 |
T |
|
| Q |
456 |
aaaaatcaattggttccaacccttccaaataaaccacaatgtgacactgaataaatggctagccatggtatccgggtctgtgatccgctgtgctagccta |
555 |
Q |
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| T |
11231199 |
aaaaatcaattggttccaacccttccaaataaaccacaatgtaacaccgaataaatggctagccatggtatccgagtctgtgatccactgtgctagccta |
11231298 |
T |
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| Q |
556 |
atctgt |
561 |
Q |
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| T |
11231299 |
atctgt |
11231304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 11230344 - 11230490
Alignment:
| Q |
13 |
agcagagacggggaatcactcctaagcaaccaccgttggatataggaatccatacatgaccttgttttgttgaaattatcagaaaaataaatggacaatg |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11230344 |
agcagagacggggaatcactcctaagcaaccatcgttggatataggaatccatacatgaccttgttttgttgaaattatcagaaaaataaatggataatg |
11230443 |
T |
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| Q |
113 |
cttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
159 |
Q |
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| T |
11230444 |
cttttccaacatgcttggttcgaaacttggacttggtgcgtgaataa |
11230490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 156 - 362
Target Start/End: Original strand, 11243086 - 11243292
Alignment:
| Q |
156 |
ataacagcaacaatcacacaaacatacattgtatgttggtctaagactaatgtgaaattattggttaatgcaccattacaacaaaccagtgtgatcccgt |
255 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||| ||||||||| | |||| ||||||| |||| |||||||||||| |||||||||||||| |
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| T |
11243086 |
ataacagcaccaatcacacaaagatacattgtatgttggtctgagactaatgcggaatttttggttactgcagcattacaacaaaacagtgtgatcccgt |
11243185 |
T |
|
| Q |
256 |
gctaagcaacgtaaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaa |
355 |
Q |
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| T |
11243186 |
gctaagcaacctaaccagttgtgccattttgaaaacatcctgcatctatgttaatctctgccgtgccaacgttcggctactcccagatttctggctctga |
11243285 |
T |
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| Q |
356 |
aactatg |
362 |
Q |
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| T |
11243286 |
aactatg |
11243292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 520
Target Start/End: Original strand, 12919278 - 12919532
Alignment:
| Q |
268 |
aaccagttgtgccattttgaaaacatccttcatctactttgatccttgtcgtgccaatgttcggctgctccaagatttctggctctaaaactatggttgg |
367 |
Q |
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|||||||||| ||| ||||||| |||||| ||||||| |||||| |||| ||||||| ||||| |||||| || ||||| | ||| ||||| || | |
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| T |
12919278 |
aaccagttgtaccagtttgaaagcatcctgcatctacattgatctttgttgtgccaacattcggttgctcccagctttctagttctgaaactctgacaga |
12919377 |
T |
|
| Q |
368 |
cttcagctttgagggattagcgttaaaaaactctgcagaaaatctggattcctccatagcgatggacaca--acagaaaggtgttttgttaaaaatcaat |
465 |
Q |
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||||| ||| | |||||||| ||||||| ||||||||||| ||||| ||| | || | || ||| |||||||| |||||| || ||||||||| |
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| T |
12919378 |
cttcatcttcaacggattagcaataaaaaattctgcagaaaaattggatatttccttcgcagtagatacaggacagaaagttgttttattgaaaatcaat |
12919477 |
T |
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| Q |
466 |
tggttccaacccttccaaataaaccacaatgtgacactgaataaatggctagcca |
520 |
Q |
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||||||| |||||||||||| ||| ||| ||| |||||| ||||||| ||||||| |
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| T |
12919478 |
tggttccgacccttccaaatcaacgacagtgtaacactggataaatgactagcca |
12919532 |
T |
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