View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18006_low_6 (Length: 578)
Name: NF18006_low_6
Description: NF18006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18006_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 189 - 340
Target Start/End: Complemental strand, 16007844 - 16007693
Alignment:
| Q |
189 |
gaagtgaggagggagtggaaaaaggtgttatgttggtcgaaggggaaatggtattgttgaggattttcaattagctatagctccctagtcgtcaaccaca |
288 |
Q |
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| T |
16007844 |
gaagtgaggagggagtggaaaacggtgttatgctggtcgaaggggaaatggtattgttgaggattttctattagctatagctccctagtcgtcaaccaca |
16007745 |
T |
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| Q |
289 |
ccaaagacctaacccaacgttcttcatcaccgctcaaatcgtccatatgtta |
340 |
Q |
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| T |
16007744 |
gcaatgatctaacccaacgttcttcatcaccgctcagatcgtccatatgtta |
16007693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 16007913 - 16007842
Alignment:
| Q |
19 |
taaccgttgtttgaatatcaattaatttgaaatacgaaaaatcaattaattttgttatttagttttatagaa |
90 |
Q |
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| T |
16007913 |
taaccgttgtttgaatatcaattaatttgaaatacgaaaaatcaattaattttgttatttagttttatagaa |
16007842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 55 - 265
Target Start/End: Complemental strand, 38051238 - 38051022
Alignment:
| Q |
55 |
aaaaatcaattaattttgttatttagttttatagaaacaaat---ttagatgaatgtgatctcataaaattaagccaaacatacatcaagactagtatag |
151 |
Q |
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| T |
38051238 |
aaaaatcaattgattttattattttgctctatagaaacaaatattttagatgaatgtgatttcagaaaattaagccaaacatacctgaagactagtatag |
38051139 |
T |
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| Q |
152 |
tgagagagttaccta---aattcatctgacagcaatatttgaagtgaggagggagtggaaaaaggtgttatgttggtcgaaggggaaatggtattgttga |
248 |
Q |
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| T |
38051138 |
tgaaagagttacctaaacaattcttctgacaacaatatttgaagcgaggaggaagtgcaaaacggtgttatgttgattgaagggaaaacggtacttttgg |
38051039 |
T |
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| Q |
249 |
ggattttcaattagcta |
265 |
Q |
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| T |
38051038 |
gaattttcaattagcta |
38051022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 38056090 - 38055881
Alignment:
| Q |
35 |
atcaattaatttgaaatacgaaaaatcaattaattttgttatttagttttatagaaacaaatttagatgaatgtgatctcataaaattaagccaaacata |
134 |
Q |
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| T |
38056090 |
atcaattaatttgaaataa-aaaaatcaattgattttgttattttgttcaataaaaacaaatttagatgaatgtaatcagagaaaattaagcaaaacata |
38055992 |
T |
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| Q |
135 |
catcaagactagtatagtgagagagttacctaaattcatctgacagcaatatttgaagtgaggagggagtggaaaaaggtgttatgttggtcgaagggga |
234 |
Q |
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| T |
38055991 |
cctcaaaactagtatagtgagatgattacctaaattcttctgacaacaatatttgaa----------agtggaaaacggtgttatgctggttgaagggga |
38055902 |
T |
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| Q |
235 |
aatggtattgttgaggatttt |
255 |
Q |
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| T |
38055901 |
aatggtactcttgagaatttt |
38055881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 38607313 - 38607364
Alignment:
| Q |
271 |
ccctagtcgtcaaccacaccaaagacctaacccaacgttcttcatcaccgct |
322 |
Q |
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| T |
38607313 |
ccctagtcgttaaccacacctaagacctaacccaacgtttctcatcaccgct |
38607364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 334
Target Start/End: Complemental strand, 12893746 - 12893690
Alignment:
| Q |
278 |
cgtcaaccacaccaaagacctaacccaacgttcttcatcaccgctcaaatcgtccat |
334 |
Q |
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| T |
12893746 |
cgtcaaccacacctatgacctaacgcaacgttcctcatcactgctgagatcgtccat |
12893690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 30396562 - 30396624
Alignment:
| Q |
282 |
aaccacaccaaagacctaacccaacgttcttcatcaccgctcaaatcgtccatatgttagtta |
344 |
Q |
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| T |
30396562 |
aaccacacctatgacctaacccaacattcttcatcaccgctgagatcgtccatctgttggtta |
30396624 |
T |
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