View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_12 (Length: 511)

Name: NF18007_high_12
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_12
NF18007_high_12
[»] chr5 (2 HSPs)
chr5 (112-493)||(22433769-22434143)
chr5 (414-496)||(29251200-29251282)
[»] chr3 (1 HSPs)
chr3 (391-491)||(42615555-42615655)
[»] chr6 (3 HSPs)
chr6 (415-491)||(14450277-14450353)
chr6 (433-493)||(14445578-14445638)
chr6 (150-193)||(14575886-14575929)
[»] chr4 (1 HSPs)
chr4 (410-493)||(1697989-1698071)
[»] scaffold0777 (1 HSPs)
scaffold0777 (150-192)||(3455-3496)
[»] chr2 (1 HSPs)
chr2 (368-404)||(19488284-19488320)
[»] chr1 (1 HSPs)
chr1 (33-73)||(27288896-27288936)


Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 112 - 493
Target Start/End: Complemental strand, 22434143 - 22433769
Alignment:
Q  112 ttggactgttgagtactaaatgttattggtaagaaaactgttggaacaagtgtgaaaattgaaggattaaaagactaaacaccaagctccacataggcac 211  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22434143 ttggactgctgagtactaaatgttatttgtaagaaaactgttggaacaagtgtgaaaattgaaggattgaaagactaaacaccaagctccacataggcac 22434044  T
Q  212 aagttgagttgttagagtaatgttgcagcaagacatgtgcatttacatnnnnnnntttataataggtttaatttcatgggttttgtgttatggcttcaga 311  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  22434043 aagttcagttgttagagtaatgttgcagcaagacatgtgcatttacataaaaaa--ttataataggtttaatttcatgggttttgtgttatggcttcaga 22433946  T
Q  312 catgatacgtacgataatgcacctttcannnnnnnattttgggattattttcaacaataattagttaaaaacccgtgtttcgcacgggttgaacattgtt 411  Q
    |||||    |||||||||||||| ||||       ||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||    
T  22433945 catga----tacgataatgcacc-ttcatttttttattttgggattattttcaacaataactagttaaaaacctatgtttcgcacgggttgaacactgtt 22433851  T
Q  412 attttgaaaatctttgttatgtgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgtgat 493  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  22433850 attttgaaaatctttgttatatgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgtttactaatgtgat 22433769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 29251200 - 29251282
Alignment:
Q  414 tttgaaaatctttgttatgtgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgtgatatt 496  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| | ||| | || |||||||||    
T  29251200 tttgaaaatctttgttatatgtttgaataagttaatatgttgtcaaccgattaattcaaatgcatgtttactactgtgatatt 29251282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 391 - 491
Target Start/End: Original strand, 42615555 - 42615655
Alignment:
Q  391 tcgcacgggttgaacattgttattttgaaaatctttgttatgtgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgt 490  Q
    |||||||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||| |||| ||| | ||||||    
T  42615555 tcgcacgggttgaacactattattttgaaattctttgttatatgtttgaataagttaatatgttgtcaaccgattaattcaactgtatgtttactaatgt 42615654  T
Q  491 g 491  Q
    |    
T  42615655 g 42615655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 14450277 - 14450353
Alignment:
Q  415 ttgaaaatctttgttatgtgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgtg 491  Q
    ||||||||||||||||| ||||| |||||||||||||||||| || | ||||||||||||||| ||| | |||||||    
T  14450277 ttgaaaatctttgttatatgttttaataagttaatatgttgtcaatcgattaattcaaatgtatgtttactaatgtg 14450353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 493
Target Start/End: Original strand, 14445578 - 14445638
Alignment:
Q  433 tgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgtgat 493  Q
    ||||| |||||||||||||||||| || | ||||||||||||||| ||| | |||||||||    
T  14445578 tgttttaataagttaatatgttgtcaatcgattaattcaaatgtatgtttactaatgtgat 14445638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 14575929 - 14575886
Alignment:
Q  150 tgttggaacaagtgtgaaaattgaaggattaaaagactaaacac 193  Q
    |||||||||||||||||||||| || |||| |||||||||||||    
T  14575929 tgttggaacaagtgtgaaaattaaaagatttaaagactaaacac 14575886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 493
Target Start/End: Complemental strand, 1698071 - 1697989
Alignment:
Q  410 ttattttgaaaatctttgttatgtgtttgaataagttaatatgttgttaaccaattaattcaaatgtacgttcattaatgtgat 493  Q
    |||||||||||||||||||||| || ||||| || |||||||||||| |||| |||||||| |||||| ||| | |||||||||    
T  1698071 ttattttgaaaatctttgttatatggttgaagaaattaatatgttgtcaaccgattaattc-aatgtatgtttactaatgtgat 1697989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 3455 - 3496
Alignment:
Q  150 tgttggaacaagtgtgaaaattgaaggattaaaagactaaaca 192  Q
    |||||||||||||||||||||||| || |||||||||||||||    
T  3455 tgttggaacaagtgtgaaaattgatgg-ttaaaagactaaaca 3496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 19488320 - 19488284
Alignment:
Q  368 ataattagttaaaaacccgtgtttcgcacgggttgaa 404  Q
    |||| |||||| |||||||||||||||||||||||||    
T  19488320 ataaatagttacaaacccgtgtttcgcacgggttgaa 19488284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 27288896 - 27288936
Alignment:
Q  33 ctctaaagcgacatataatttgagacagcgggagtattatt 73  Q
    |||||||||||||||||||||| ||| | ||||||||||||    
T  27288896 ctctaaagcgacatataatttgggacggagggagtattatt 27288936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University