View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_13 (Length: 509)

Name: NF18007_high_13
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_13
NF18007_high_13
[»] chr7 (12 HSPs)
chr7 (15-445)||(4647063-4647495)
chr7 (14-148)||(17245446-17245580)
chr7 (336-394)||(4630780-4630838)
chr7 (446-490)||(4647476-4647520)
chr7 (328-368)||(4846225-4846265)
chr7 (328-370)||(4636708-4636750)
chr7 (334-370)||(4661649-4661685)
chr7 (334-370)||(4666786-4666822)
chr7 (334-394)||(4672527-4672587)
chr7 (338-379)||(4653375-4653416)
chr7 (334-370)||(4643522-4643558)
chr7 (338-370)||(4697398-4697430)
[»] scaffold0252 (1 HSPs)
scaffold0252 (18-234)||(4846-5062)
[»] chr2 (1 HSPs)
chr2 (16-234)||(25101607-25101825)
[»] chr3 (5 HSPs)
chr3 (18-202)||(8562975-8563159)
chr3 (16-202)||(6009013-6009199)
chr3 (16-165)||(17783823-17783976)
chr3 (16-165)||(19085342-19085495)
chr3 (16-165)||(19092450-19092603)
[»] chr8 (2 HSPs)
chr8 (16-204)||(15993397-15993585)
chr8 (16-202)||(14502697-14502883)
[»] chr5 (2 HSPs)
chr5 (16-202)||(22289352-22289538)
chr5 (19-204)||(28243619-28243804)
[»] chr6 (1 HSPs)
chr6 (36-165)||(26904527-26904656)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 445
Target Start/End: Original strand, 4647063 - 4647495
Alignment:
Q  15 acatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgag 114  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| |    
T  4647063 acatcatcatcaagagaggttatacggtttaactttttccgagctgttgccgatgcatgaaaaaactttgtatttctatcaccatccttgtacaagtgtg 4647162  T
Q  115 ctttagcacattgatgccaata--ggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagct 212  Q
    ||||||||| |||| |||||||  ||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||||    
T  4647163 ctttagcacgttgacgccaatataggcatcgtcttaggacatcagccgttgcaagcgtttccttagctcaaacatgcgagtttggtcctcaccagtagct 4647262  T
Q  213 tgcagccgtgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatcctccgcgcatg 312  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4647263 tgcagccgcgtgtcttgcatttctttgcaacaattgtcaatatcgcgctttaaattgtggcaatgagtctttctccagacggacatatccttcccgcatg 4647362  T
Q  313 atattaattttggaataatcattgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacatatgaacaagcacaatcctt 412  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4647363 atatcaattttggaataatcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatgaacaagcacaatcctt 4647462  T
Q  413 attgacagggagcaccagcccatgcaatcacat 445  Q
    |||||||||||||||||||||||||||||||||    
T  4647463 attgacagggagcaccagcccatgcaatcacat 4647495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 17245446 - 17245580
Alignment:
Q  14 gacatcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtga 113  Q
    ||||||||| ||||||||  | || || ||||||||||| | |||| | || |||||||||||||| || || ||||||||||||||||||||||| |||    
T  17245446 gacatcatcgtcaagagaaataatgcgatttacctttttacgagctgtagcagatgcatgaaaaaatttggtgtttctatcgccatccttgtaccaatga 17245545  T
Q  114 gctttagcacattgatgccaataggcatcgtcttg 148  Q
    |  || |||| |||  ||||||| ||||| |||||    
T  17245546 gtctttgcacgttgccgccaataagcatcatcttg 17245580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 4630780 - 4630838
Alignment:
Q  336 gaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 394  Q
    |||||||||||||||||||||||||||||||||||   |||||| || |||||||||||    
T  4630780 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 4630838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 490
Target Start/End: Original strand, 4647476 - 4647520
Alignment:
Q  446 accagcccatgcaatcacatcagcatattgttcaaccaaaatatc 490  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||    
T  4647476 accagcccatgcaatcacatcagcataatgttcagccaaaatatc 4647520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 4846265 - 4846225
Alignment:
Q  328 taatcattgaagcttgattgaaagattaactctttcaattt 368  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  4846265 taatcgttgaagcttgattgaaagattaactctttcaattt 4846225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 4636708 - 4636750
Alignment:
Q  328 taatcattgaagcttgattgaaagattaactctttcaatttga 370  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  4636708 taatcgttgaagcttgattgaaagataaactctttcaatttga 4636750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 4661649 - 4661685
Alignment:
Q  334 ttgaagcttgattgaaagattaactctttcaatttga 370  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4661649 ttgaagcttgattgaaagatcaactctttcaatttga 4661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 4666786 - 4666822
Alignment:
Q  334 ttgaagcttgattgaaagattaactctttcaatttga 370  Q
    ||||||||| |||||||||||||||||||||||||||    
T  4666786 ttgaagcttaattgaaagattaactctttcaatttga 4666822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 4672527 - 4672587
Alignment:
Q  334 ttgaagcttgattgaaagattaactctttcaatttgattccttcctcctggagagtacata 394  Q
    ||||||||| || ||||||||||||||||||||||||   |||||| || |||||||||||    
T  4672527 ttgaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 4653375 - 4653416
Alignment:
Q  338 agcttgattgaaagattaactctttcaatttgattccttcct 379  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttcct 4653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 4643522 - 4643558
Alignment:
Q  334 ttgaagcttgattgaaagattaactctttcaatttga 370  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  4643522 ttgaagcttgattgaaagattagctctttcaagttga 4643558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 370
Target Start/End: Complemental strand, 4697430 - 4697398
Alignment:
Q  338 agcttgattgaaagattaactctttcaatttga 370  Q
    ||||||||||||||||||| |||||||||||||    
T  4697430 agcttgattgaaagattaagtctttcaatttga 4697398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 5062 - 4846
Alignment:
Q  18 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 117  Q
    |||||||||||||| |||||||| |||||||||||||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  5062 tcatcatcaagagatgttatacgatttacctttttccaggctgttgccgaggcatgaaaaaacttcgtatttctatcaccatccttgtaccagtgagttt 4963  T
Q  118 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgcag 217  Q
    |||||| |||| |||||||||||||||||||||||| ||  |||||||   |||||| ||| |||| ||| | | |||| ||||| | || ||| ||||     
T  4962 tagcacgttgacgccaataggcatcgtcttgggacaacaagcgttgcatacgtttccgaagttcaagcatacgattttgatcctccccagaagcatgcat 4863  T
Q  218 ccgtgtgtcttgcattt 234  Q
    |||||||||||||||||    
T  4862 ccgtgtgtcttgcattt 4846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 25101825 - 25101607
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    ||||||||| ||| |||||||||| ||||||||||||||  ||| ||| ||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  25101825 catcatcatgaagggaggttatacagtttacctttttccgggctgttgtcgaggcatgaaaaaactttgtatttctgtcgccatccttataccagtgagc 25101726  T
Q  116 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcactagtagcttgc 215  Q
    |||||||| |||| ||||||||||||||||||||||||  |  | ||||| |  ||||||||| |||| |||||   |||||||||| | || ||| | |    
T  25101725 tttagcacgttgacgccaataggcatcgtcttgggacattaagctttgcatgcatttcctaaggtcaagcatgcggttttggtcctccccagaagcatac 25101626  T
Q  216 agccgtgtgtcttgcattt 234  Q
    || ||| ||||||||||||    
T  25101625 agtcgtttgtcttgcattt 25101607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 8563159 - 8562975
Alignment:
Q  18 tcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctt 117  Q
    ||||| ||||||||| |||| || |||||||| |||| || | ||||||| ||||||||||||||||||||||| || |||||||| ||| |||||| ||    
T  8563159 tcatcgtcaagagagtttatgcgatttaccttcttccgagttgttgccgaggcatgaaaaaactttgtatttctgtcaccatccttatactagtgagttt 8563060  T
Q  118 tagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 202  Q
    |||||| |||| |||||||||||||||||||||| ||||  |||||||   |||||| |||||||| ||||| |||||| |||||    
T  8563059 tagcacgttgacgccaataggcatcgtcttgggatagcaatcgttgcatacgtttccgaagctcaaccatgcgagtttgatcctc 8562975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 6009013 - 6009199
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    |||||||||||||||| |||||||| |||||||| || | |||  ||||||| || ||||||||||| ||||| |  || |||| ||| ||||| || |     
T  6009013 catcatcatcaagagaagttatacgatttaccttctttcgagccgttgccgaagcgtgaaaaaacttggtattacggtcaccatacttataccaatgggt 6009112  T
Q  116 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 202  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  6009113 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 6009199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 17783976 - 17783823
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  17783976 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 17783877  T
Q  116 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 165  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  17783876 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 17783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 19085495 - 19085342
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19085495 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19085396  T
Q  116 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 165  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19085395 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19085342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 19092603 - 19092450
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    ||||||||||||||||||||||||| |||||||| || | |||  ||||||| |||||||||||||  ||||| |  ||||||||||| ||||| || |     
T  19092603 catcatcatcaagagaggttatacgatttaccttctttcgagccgttgccgaagcatgaaaaaactaggtattacggtcgccatccttataccaatgggt 19092504  T
Q  116 tttagcacattgatgcc----aataggcatcgtcttgggacagcagccgttgca 165  Q
    ||| ||   |||| |||    |||| ||||| ||||||||||||||||||||||    
T  19092503 ttttgcgtgttgacgccaattaataagcatcatcttgggacagcagccgttgca 19092450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 15993397 - 15993585
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  15993397 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 15993496  T
Q  116 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 204  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  15993497 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 15993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 14502883 - 14502697
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  14502883 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 14502784  T
Q  116 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 202  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  14502783 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 14502697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 22289538 - 22289352
Alignment:
Q  16 catcatcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagc 115  Q
    |||||||||||||||| |||||||| |||||||| || | |||  | ||||| || ||||||||||| ||||| |  ||||||||||| ||||| || |     
T  22289538 catcatcatcaagagaagttatacgatttaccttctttcgagccgtagccgaagcgtgaaaaaacttggtattacggtcgccatccttataccaatgggt 22289439  T
Q  116 tttagcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctc 202  Q
    ||| || | |||| ||||||| ||||| ||||||||||||||||||||||    |||||| ||||| ||||||| |  |||||||||    
T  22289438 ttttgcgcgttgacgccaataagcatcatcttgggacagcagccgttgcattcttttccttagctcgaacatgcgaacttggtcctc 22289352  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 28243804 - 28243619
Alignment:
Q  19 catcatcaagagaggttatacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagcttt 118  Q
    |||||||||||||||||||| | |||||||| || |||||| | ||||| || ||||||||||| ||||| |  |  |||||||| ||||| |||| |||    
T  28243804 catcatcaagagaggttataagatttaccttctttcaagctgtagccgaagcgtgaaaaaacttggtattacggttaccatccttataccaatgagtttt 28243705  T
Q  119 agcacattgatgccaataggcatcgtcttgggacagcagccgttgcaagtgtttcctaagctcaaacatgcaagtttggtcctcac 204  Q
     |||  |||| ||||||| ||||| | ||||||||| ||||||||||    |||||| ||||| ||||||| |  |||||||||||    
T  28243704 tgcatgttgaagccaataagcatcatattgggacagtagccgttgcattcttttccttagctcgaacatgcgaacttggtcctcac 28243619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 26904656 - 26904527
Alignment:
Q  36 atacggtttacctttttccaagctattgccgatgcatgaaaaaactttgtatttctatcgccatccttgtaccagtgagctttagcacattgatgccaat 135  Q
    ||||| |||||||| |||||||||   || ||| ||||||| || |||||||||| ||| |||||||||||||| ||||  ||||||| |||  ||||||    
T  26904656 atacgatttaccttcttccaagctgaagcagatacatgaaagaattttgtatttcgatcaccatccttgtaccaatgagtcttagcacgttgtcgccaat 26904557  T
Q  136 aggcatcgtcttgggacagcagccgttgca 165  Q
    ||||||| ||||||||||  ||||||||||    
T  26904556 aggcatcatcttgggacaaaagccgttgca 26904527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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