View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_15 (Length: 495)

Name: NF18007_high_15
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_15
NF18007_high_15
[»] chr6 (41 HSPs)
chr6 (10-479)||(26659158-26659627)
chr6 (10-479)||(26765129-26765598)
chr6 (214-476)||(26638806-26639074)
chr6 (214-476)||(26744772-26745040)
chr6 (294-477)||(27657234-27657418)
chr6 (388-461)||(28782724-28782797)
chr6 (388-468)||(27600863-27600943)
chr6 (354-464)||(28789893-28790003)
chr6 (413-474)||(26659624-26659685)
chr6 (413-474)||(26765595-26765656)
chr6 (57-173)||(28789599-28789715)
chr6 (355-473)||(26650084-26650205)
chr6 (355-473)||(26756052-26756173)
chr6 (214-283)||(26626525-26626594)
chr6 (214-283)||(26732502-26732571)
chr6 (418-475)||(27424724-27424781)
chr6 (404-477)||(27607659-27607732)
chr6 (61-173)||(28795627-28795739)
chr6 (120-162)||(25077321-25077363)
chr6 (120-177)||(27657544-27657601)
chr6 (120-172)||(26626440-26626492)
chr6 (120-172)||(26732417-26732469)
chr6 (120-192)||(31287883-31287955)
chr6 (232-283)||(25077406-25077457)
chr6 (219-281)||(26888391-26888453)
chr6 (232-318)||(26888518-26888604)
chr6 (386-471)||(27600677-27600765)
chr6 (214-283)||(28795786-28795855)
chr6 (354-429)||(28782519-28782594)
chr6 (224-266)||(25486755-25486797)
chr6 (224-266)||(25514244-25514286)
chr6 (224-262)||(25548356-25548394)
chr6 (224-266)||(25583086-25583128)
chr6 (220-262)||(27601255-27601297)
chr6 (126-179)||(26805824-26805877)
chr6 (214-283)||(26805924-26805993)
chr6 (354-407)||(26953163-26953216)
chr6 (356-397)||(27600826-27600867)
chr6 (214-283)||(28789768-28789837)
chr6 (227-283)||(26827272-26827328)
chr6 (446-474)||(26953303-26953331)
[»] chr4 (14 HSPs)
chr4 (227-477)||(18652044-18652297)
chr4 (227-477)||(18686142-18686395)
chr4 (227-477)||(18720632-18720885)
chr4 (247-477)||(18728068-18728301)
chr4 (214-477)||(18676102-18676368)
chr4 (227-426)||(18695999-18696201)
chr4 (420-477)||(18693672-18693729)
chr4 (418-475)||(18076774-18076831)
chr4 (120-159)||(18686466-18686505)
chr4 (121-159)||(18696272-18696310)
chr4 (120-159)||(18676426-18676465)
chr4 (120-159)||(18681793-18681832)
chr4 (120-159)||(18720932-18720971)
chr4 (120-159)||(18726025-18726064)
[»] scaffold0419 (3 HSPs)
scaffold0419 (354-464)||(11037-11147)
scaffold0419 (57-173)||(10749-10865)
scaffold0419 (214-283)||(10912-10981)
[»] scaffold0277 (5 HSPs)
scaffold0277 (388-461)||(1068-1141)
scaffold0277 (354-464)||(10196-10306)
scaffold0277 (57-173)||(10484-10600)
scaffold0277 (120-162)||(1529-1571)
scaffold0277 (214-283)||(10362-10431)
[»] chr1 (3 HSPs)
chr1 (226-406)||(26139438-26139618)
chr1 (438-476)||(26139704-26139742)
chr1 (136-176)||(26139336-26139376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (418-475)||(62582-62639)
[»] chr8 (1 HSPs)
chr8 (226-272)||(29270563-29270609)


Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 26659158 - 26659627
Alignment:
Q  10 gattattctactgattatttatcgtcttgtccctcttacatgaatctgtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659158 gattattctactgattatttatcgtcttgtccctcttacatgaatctgtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatt 26659257  T
Q  110 tcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttggagaatttcaatcttcctgaaatagagatnnn 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  26659258 tcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttggagaatttcaatcttcctgaaatagagataaa 26659357  T
Q  210 nnnnttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaatta 309  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659358 aaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaatta 26659457  T
Q  310 gatgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaac 409  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659458 gatgaagatgtcaatgcttcattaccacaatttcatcctgcgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaac 26659557  T
Q  410 agtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccatct 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26659558 agtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccatct 26659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 479
Target Start/End: Original strand, 26765129 - 26765598
Alignment:
Q  10 gattattctactgattatttatcgtcttgtccctcttacatgaatctgtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765129 gattattctactgattatttatcgtcttgtccctcttacatgaatctgtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatt 26765228  T
Q  110 tcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttggagaatttcaatcttcctgaaatagagatnnn 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  26765229 tcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttggagaatttcaatcttcctgaaatagagataaa 26765328  T
Q  210 nnnnttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaatta 309  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765329 aaaattaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaatta 26765428  T
Q  310 gatgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaac 409  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765429 gatgaagatgtcaatgcttcattaccacaatttcatcctgcgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaac 26765528  T
Q  410 agtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccatct 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26765529 agtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccatct 26765598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 476
Target Start/End: Original strand, 26638806 - 26639074
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtc---gtaatagaaagcgaaaattag 310  Q
    ||||| ||||| | ||| |||||||| || || |||||||||||||||||||| |||||| ||||||||| || ||    |||||||||| |||||||||    
T  26638806 ttaaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattag 26638905  T
Q  311 atgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaaca 410  Q
    ||||| || | |||||||||||| |||||||| |  ||     ||||||||| ||||| || | ||||| | ||  ||||| ||||||||| ||||| ||    
T  26638906 atgaatatctgaatgcttcattatcacaatttgagtctcctttgaaaaagcaaagattggtaggagtgggagttttagagatagaaatttttcagcagca 26639005  T
Q  411 gtatct---agctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacacca 476  Q
      ||||   ||||||| |||||| ||||| |||| ||||||| |||||||||||| ||||| |||||||    
T  26639006 acatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacacca 26639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 214 - 476
Target Start/End: Original strand, 26744772 - 26745040
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtc---gtaatagaaagcgaaaattag 310  Q
    ||||| ||||| | ||| |||||||| || || |||||||||||||||||||| |||||| ||||||||| || ||    |||||||||| |||||||||    
T  26744772 ttaaggagtgcaccaatgggaatccacgttttaaaggagaaaagcaacacggaggaggatgtgatattcaccaatccttataatagaaagagaaaattag 26744871  T
Q  311 atgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaaca 410  Q
    ||||| || | |||||||||||| |||||||| |  ||     ||||||||| ||||| || | ||||| | ||  ||||| ||||||||| ||||| ||    
T  26744872 atgaatatctgaatgcttcattatcacaatttgagtctcctttgaaaaagcaaagattggtaggagtgggagttttagagatagaaatttttcagcagca 26744971  T
Q  411 gtatct---agctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacacca 476  Q
      ||||   ||||||| |||||| ||||| |||| ||||||| |||||||||||| ||||| |||||||    
T  26744972 acatctagaagctttactgtcaggcatgcggaacatggtgctaactgaaacaaaataaaagtaacacca 26745040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 477
Target Start/End: Complemental strand, 27657418 - 27657234
Alignment:
Q  294 tagaaagcgaaaattagatgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcataga---tttgtggaagtggaacttacagag 390  Q
    |||||||  |||||||||  || || |||||||||  |||  ||||||||| ||  ||| ||||||||| |||   || |||||||||| | || | |||    
T  27657418 tagaaagataaaattagaaaaatatctcaatgctttgttattacaatttcacccactgctgaaaaagcaaagaaggttagtggaagtgggagtttcggag 27657319  T
Q  391 acagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||| |||| ||||||  ||||| |||||||||||    
T  27657318 acagaaattttgcagcaacaacatctagctttagtgtcagtcatgcagaacttggttcttaatgaaac--aagaataggaacaccat 27657234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 28782724 - 28782797
Alignment:
Q  388 gagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaa 461  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  28782724 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 28782797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 388 - 468
Target Start/End: Complemental strand, 27600943 - 27600863
Alignment:
Q  388 gagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaag 468  Q
    |||||||||| ||||||||| |||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||    
T  27600943 gagacagaaagtttgcagcagcagtatctagctgtagtgtccggcatgcggaacttggtgcttactgaaacaaaagaaaag 27600863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 28789893 - 28790003
Alignment:
Q  354 gaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttact 453  Q
    ||||||||| ||||| |||||||||| | || ||||||||||||||| |||||| ||  ||||| |||||| ||||| |||||| |||||||| ||||||    
T  28789893 gaaaaagcaaagattggtggaagtggtagtttcagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttact 28789992  T
Q  454 gaaacaaaaga 464  Q
    |||||||||||    
T  28789993 gaaacaaaaga 28790003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 474
Target Start/End: Original strand, 26659624 - 26659685
Alignment:
Q  413 atctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacac 474  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  26659624 atctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26659685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 474
Target Start/End: Original strand, 26765595 - 26765656
Alignment:
Q  413 atctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacac 474  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  26765595 atctagctttagtgtcaggcatgcacaacttggtgcttattgaaacaaaagaaaaggaacac 26765656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 28789599 - 28789715
Alignment:
Q  57 gtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatgg 156  Q
    |||||||||| ||||||||||| ||||||  |||||||||   | |  |||||| |||| || ||||||||||||||| ||||||||||||| |||||||    
T  28789599 gtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactgaatgg 28789698  T
Q  157 atccatatcgagcttaa 173  Q
    |||||| | ||||||||    
T  28789699 atccatgtggagcttaa 28789715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 26650084 - 26650205
Alignment:
Q  355 aaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctag---ctttagtgtcagacatgcagaacttggtgctta 451  Q
    |||||||| ||||| |||||||||| | || || ||||||||||||||||||| ||  ||||||   |||||||||||||||||| | | ||||| || |    
T  26650084 aaaaagcaaagattggtggaagtgggagtttcaaagacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctca 26650183  T
Q  452 ctgaaacaaaagaaaaggaaca 473  Q
    ||||||||||| ||||||||||    
T  26650184 ctgaaacaaaacaaaaggaaca 26650205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 26756052 - 26756173
Alignment:
Q  355 aaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctag---ctttagtgtcagacatgcagaacttggtgctta 451  Q
    |||||||| ||||| |||||||||| | || || ||||||||||||||||||| ||  ||||||   |||||||||||||||||| | | ||||| || |    
T  26756052 aaaaagcaaagattggtggaagtgggagtttcaaagacagaaattttgcagcagcataatctagtagctttagtgtcagacatgcgggatttggtcctca 26756151  T
Q  452 ctgaaacaaaagaaaaggaaca 473  Q
    ||||||||||| ||||||||||    
T  26756152 ctgaaacaaaacaaaaggaaca 26756173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 26626525 - 26626594
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  26626525 ttaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattca 26626594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 26732502 - 26732571
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||    
T  26732502 ttaaggagtgcacaaatgggaatccatgtgttgaaggagaaaagcaacacagatgaggatgtcatattca 26732571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 27424781 - 27424724
Alignment:
Q  418 gctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacacc 475  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  27424781 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacacc 27424724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 27607732 - 27607659
Alignment:
Q  404 agcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    |||||||  |||||||||||||||||| ||||| ||||||||| |||| |||||||||||||  ||||||||||    
T  27607732 agcaacaacatctagctttagtgtcagccatgcggaacttggttcttaatgaaacaaaagaattggaacaccat 27607659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 28795627 - 28795739
Alignment:
Q  61 gaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatggatcc 160  Q
    |||||| |||||||||||||| |||  |||||||||   | | ||||||| | || ||  |||||||||||||| ||||||||||||||||| |||||||    
T  28795627 gaacattcatttttgtttgatgtgaaattggaagaacagattaaacatttgaatctcatttctgaaatggacaaagcacttttaaaaaatgagtggatcc 28795726  T
Q  161 atatcgagcttaa 173  Q
    || | ||||||||    
T  28795727 atgtggagcttaa 28795739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 25077321 - 25077363
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccat 162  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  25077321 gtctgaaatggacaaagcacttttaaaaaatgaatggatccat 25077363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 27657601 - 27657544
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttg 177  Q
    ||||||||||||||| | |||||| |||||||||||||||||| | ||||||||||||    
T  27657601 gtctgaaatggacaaagaacttttgaaaaatgaatggatccatgtggagcttaagttg 27657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 26626440 - 26626492
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagctta 172  Q
    |||||||||||||||  |||||||||||||||||||||||||| | |||||||    
T  26626440 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26626492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 26732417 - 26732469
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagctta 172  Q
    |||||||||||||||  |||||||||||||||||||||||||| | |||||||    
T  26732417 gtctgaaatggacaaaacacttttaaaaaatgaatggatccatgtggagctta 26732469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 31287883 - 31287955
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttggagaatttcaatctt 192  Q
    ||||||||||||||| ||||||||  ||||||||||||||| | | |||||| ||||| ||| ||||||||||    
T  31287883 gtctgaaatggacaaagcacttttggaaaatgaatggatccgtgtggagcttgagttgaagagtttcaatctt 31287955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 25077406 - 25077457
Alignment:
Q  232 ggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||||||||||  ||||||||||||||||| |||||||||| |||||||||    
T  25077406 ggaatccatgtgcggaaggagaaaagcaacaaggatgaggatgtgatattca 25077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 26888391 - 26888453
Alignment:
Q  219 cagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatatt 281  Q
    |||||| |||||||||||||| ||||||||||||||| |||| ||||| || ||| |||||||    
T  26888391 cagtgcacaaattggaatccacgtgttgaaggagaaaggcaagacggaggatgatgtgatatt 26888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 26888518 - 26888604
Alignment:
Q  232 ggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaattagatgaagat 318  Q
    |||||||||| |||||||||||||||||||||| | ||||||  |||||||| ||||| |  |||| ||  ||||| ||||||||||    
T  26888518 ggaatccatgcgttgaaggagaaaagcaacacgaaggaggatgcgatattcaccagtccttgtagagagacaaaatcagatgaagat 26888604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 27600765 - 27600677
Alignment:
Q  386 cagagacagaaattttgcagcaacagtatctagctttagtgtca---gacatgcagaacttggtgcttactgaaacaaaagaaaaggaa 471  Q
    |||||||||||| ||||||||| ||  ||||||||||| |||||   | |||||||||| |||||||||| || | |||||||||||||    
T  27600765 cagagacagaaagtttgcagcagcaagatctagctttattgtcatcaggcatgcagaacatggtgcttacagacaaaaaagaaaaggaa 27600677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 28795786 - 28795855
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||||||||||||||| |||||||| |||  |||||||||||||||| | || ||| || |||||||||    
T  28795786 ttaagcagtgcgcaaatgggaatccacgtgaggaaggagaaaagcaacgcagaggagaatgtgatattca 28795855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 28782519 - 28782594
Alignment:
Q  354 gaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagctttagtgtca 429  Q
    ||||||||| ||||| |||||||||| | || ||||||||||||||| |||||| ||  ||||||| ||| |||||    
T  28782519 gaaaaagcaaagattggtggaagtggtagtttcagagacagaaatttggcagcagcaacatctagcattattgtca 28782594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 25486755 - 25486797
Alignment:
Q  224 cgcaaattggaatccatgtgttgaaggagaaaagcaacacgga 266  Q
    ||||||| |||||||| |||| |||||||||||||||||||||    
T  25486755 cgcaaatcggaatccacgtgtggaaggagaaaagcaacacgga 25486797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 25514244 - 25514286
Alignment:
Q  224 cgcaaattggaatccatgtgttgaaggagaaaagcaacacgga 266  Q
    ||||||| |||||||| |||| |||||||||||||||||||||    
T  25514244 cgcaaatgggaatccacgtgtggaaggagaaaagcaacacgga 25514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 25548356 - 25548394
Alignment:
Q  224 cgcaaattggaatccatgtgttgaaggagaaaagcaaca 262  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  25548356 cgcaaatgggaatccatgtgtggaaggagaaaagcaaca 25548394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 25583086 - 25583128
Alignment:
Q  224 cgcaaattggaatccatgtgttgaaggagaaaagcaacacgga 266  Q
    ||||||| |||||||| |||| |||||||||||||||||||||    
T  25583086 cgcaaatgggaatccacgtgtggaaggagaaaagcaacacgga 25583128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 27601297 - 27601255
Alignment:
Q  220 agtgcgcaaattggaatccatgtgttgaaggagaaaagcaaca 262  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||    
T  27601297 agtgcacaaatgggaatccatgtggtgaaggagaaaagcaaca 27601255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 26805824 - 26805877
Alignment:
Q  126 aatggacaatgcacttttaaaaaatgaatggatccatatcgagcttaagttgga 179  Q
    ||||||||| | |||||  |||||||||||||||||| | ||||||||||||||    
T  26805824 aatggacaaagtactttcgaaaaatgaatggatccatgtggagcttaagttgga 26805877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 26805924 - 26805993
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||| ||||| ||||| |||||||| ||||| | |||||||||||||||||| ||| || || ||||||    
T  26805924 ttaaggagtgctcaaatcggaatccacgtgttaatggagaaaagcaacacggaggagaatgtggtattca 26805993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 407
Target Start/End: Original strand, 26953163 - 26953216
Alignment:
Q  354 gaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagca 407  Q
    |||||||||||||||||| ||||||| | || |||||||||| | |||||||||    
T  26953163 gaaaaagcatagatttgttgaagtgggagtttcagagacagagagtttgcagca 26953216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 27600867 - 27600826
Alignment:
Q  356 aaaagcatagatttgtggaagtggaacttacagagacagaaa 397  Q
    |||||||||||||||||||||||| | || ||||||||||||    
T  27600867 aaaagcatagatttgtggaagtgggagtttcagagacagaaa 27600826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 28789768 - 28789837
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||||||||||||||| |||||||| |||   ||||||||||||||| | || ||| || |||||||||    
T  28789768 ttaagcagtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattca 28789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26827272 - 26827328
Alignment:
Q  227 aaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    |||||||||| || ||||||||||||||||| | || ||| |||||| |||||||||    
T  26827272 aaattggaattcacgtgttgaaggagaaaaggagcatggaggaggatgtgatattca 26827328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 474
Target Start/End: Original strand, 26953303 - 26953331
Alignment:
Q  446 tgcttactgaaacaaaagaaaaggaacac 474  Q
    |||||||||||||||||||||||||||||    
T  26953303 tgcttactgaaacaaaagaaaaggaacac 26953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 227 - 477
Target Start/End: Complemental strand, 18652297 - 18652044
Alignment:
Q  227 aaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatag---aaagcgaaaattagatgaagatgtcaa 323  Q
    |||| |||||||| |||||||||||||||| ||||||| |||||||| |||||||||  | || | ||||   |||| |||||||||||||| || ||||    
T  18652297 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcattaatccttatagtagaaagagaaaattagatgaatatctcaa 18652198  T
Q  324 tgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagcttta 423  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||||||||||| | || |||||||||||||||||||||| ||  |||||||||||    
T  18652197 tgcttcattatcacaatttcatccttcgctgaaaaagcatagatttgtggaagtgggagtttcagagacagaaattttgcagcagcaacatctagcttta 18652098  T
Q  424 gtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18652097 gtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 18652044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 227 - 477
Target Start/End: Complemental strand, 18686395 - 18686142
Alignment:
Q  227 aaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatag---aaagcgaaaattagatgaagatgtcaa 323  Q
    |||| |||||||| |||| ||||||||||| ||||||| |||||||| ||||||||| || |  | ||||   |||| |||||||||||||| || ||||    
T  18686395 aaatgggaatccacgtgtggaaggagaaaaacaacacgaatgaggatgtgatattcaccaattcttatagtagaaagagaaaattagatgaatatctcaa 18686296  T
Q  324 tgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagcttta 423  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||||||||||| | || |||||||||||||||||||||| ||  |||||||||||    
T  18686295 tgcttcattatcacaatttcatccttcgctgaaaaagcatagatttgtggaagtgggagtttcagagacagaaattttgcagcagcaacatctagcttta 18686196  T
Q  424 gtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    ||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||    
T  18686195 gtgtcaggcatgcggaacttggtgcttaatgaaacaatagaaaaggaacaccat 18686142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 227 - 477
Target Start/End: Complemental strand, 18720885 - 18720632
Alignment:
Q  227 aaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtc---gtaatagaaagcgaaaattagatgaagatgtcaa 323  Q
    |||| |||||||| |||||||||||||||| ||||||| |||||||| ||||||||| || ||    || ||||||| |||||||||||||| || ||||    
T  18720885 aaatgggaatccacgtgttgaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaattagatgaatatctcaa 18720786  T
Q  324 tgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagcttta 423  Q
    |||||||||| ||||||||||||||  || |||||||||||||||||||||||||| | || |||||||||||||||||||||| ||  |||||| ||||    
T  18720785 tgcttcattatcacaatttcatcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacagaaattttgcagcagcaacatctagtttta 18720686  T
Q  424 gtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
     || ||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18720685 ttgccaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 18720632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 247 - 477
Target Start/End: Complemental strand, 18728301 - 18728068
Alignment:
Q  247 aaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaa---agcgaaaattagatgaagatgtcaatgcttcattaccacaatttc 343  Q
    |||||||||| ||||||| |||||||| ||||||||| || || | |||| |   || |||||||||||||| || |||||||||||||| |||||||||    
T  18728301 aaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagatagagaaaattagatgaatatctcaatgcttcattatcacaatttc 18728202  T
Q  344 atcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaactt 443  Q
    |||||  || |||||||||||||||||||||||||| | || |||||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||    
T  18728201 atcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacagaaattttgcagcagcaacatctagctttagtgtcaggcatgcggaactt 18728102  T
Q  444 ggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    ||||||||||||||||||||||||||||||||||    
T  18728101 ggtgcttactgaaacaaaagaaaaggaacaccat 18728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 214 - 477
Target Start/End: Complemental strand, 18676368 - 18676102
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatag---aaagcgaaaattag 310  Q
    ||||| |||||  |||| |||||||| ||||  |||||||||| ||||||| |||||||| ||||||||| || || | ||||   |||| ||||| |||    
T  18676368 ttaagaagtgcaaaaatgggaatccacgtgtgcaaggagaaaaacaacacgaatgaggatgtgatattcaccaatccttatagtagaaagagaaaaatag 18676269  T
Q  311 atgaagatgtcaatgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaaca 410  Q
    ||||| || |||||||||||||| ||||||||||||||  || |||||||||||||||||||||||||| | || |||||||||||||||||||||| ||    
T  18676268 atgaatatctcaatgcttcattatcacaatttcatcctacgctgaaaaagcatagatttgtggaagtgggagtttcagagacagaaattttgcagcagca 18676169  T
Q  411 gtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
      |||||| |||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18676168 acatctagttttattgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 18676102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 227 - 426
Target Start/End: Complemental strand, 18696201 - 18695999
Alignment:
Q  227 aaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtc---gtaatagaaagcgaaaattagatgaagatgtcaa 323  Q
    |||| |||||||| |||| |||||||||||| ||||   |||||||| ||||||||| || ||    || ||||||| || ||||||||||| || ||||    
T  18696201 aaatgggaatccacgtgtggaaggagaaaagtaacataaatgaggatgtgatattcaccaatccttatagtagaaagagagaattagatgaatatctcaa 18696102  T
Q  324 tgcttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagcttta 423  Q
    |||||||||| ||||||||||||||   | |||||||||||||||| ||||||| | | || |||||| ||||||||||||||| ||  |||||||||||    
T  18696101 tgcttcattatcacaatttcatcctactctgaaaaagcatagatttatggaagtcggagtttcagagagagaaattttgcagcagcaacatctagcttta 18696002  T
Q  424 gtg 426  Q
    |||    
T  18696001 gtg 18695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 18693729 - 18693672
Alignment:
Q  420 tttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacaccat 477  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  18693729 tttagtgtcaggcatgcggaacttggtgcttactgaaacaatagaaaaggaacaccat 18693672  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 18076774 - 18076831
Alignment:
Q  418 gctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacacc 475  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  18076774 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacacc 18076831  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 18686505 - 18686466
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  18686505 gtctgaaatggacaaagcacttttaaaaaatgaatggatc 18686466  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 18696310 - 18696272
Alignment:
Q  121 tctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18696310 tctgaaatggacaaagcacttttaaaaaatgaatggatc 18696272  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 18676465 - 18676426
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  18676465 gtctgcaatggacaaagcacttttaaaaaatgaatggatc 18676426  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 18681832 - 18681793
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  18681832 gtctgaaatggacaaagcacttttaaaaaatgaacggatc 18681793  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 18720971 - 18720932
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  18720971 gtctgaaatggacaaagcacatttaaaaaatgaatggatc 18720932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 18726064 - 18726025
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatc 159  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  18726064 gtctgaaatggacaaagcacttttaaaaaatgaacggatc 18726025  T

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Target: scaffold0419 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 354 - 464
Target Start/End: Original strand, 11037 - 11147
Alignment:
Q  354 gaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttact 453  Q
    ||||||||| ||||| |||||||||| | || ||||||||||||||| |||||| || ||||||||||||||||||| |||||| |||||||||||||||    
T  11037 gaaaaagcaaagattggtggaagtggtagtttcagagacagaaatttggcagcagcaatatctagctttagtgtcaggcatgcaaaacttggtgcttact 11136  T
Q  454 gaaacaaaaga 464  Q
    |||||||||||    
T  11137 gaaacaaaaga 11147  T

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Target: scaffold0419; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 10749 - 10865
Alignment:
Q  57 gtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatgg 156  Q
    |||||||||| ||||||||||| ||||||  |||||||||   | |  ||||||  ||| |  ||||||||||||| | ||| |||||| ||||||||||    
T  10749 gtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgtgtcgcctgtctgaaatggacgaagcaattttaagaaatgaatgg 10848  T
Q  157 atccatatcgagcttaa 173  Q
    |||||| | ||||||||    
T  10849 atccatgtggagcttaa 10865  T

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Target: scaffold0419; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 10912 - 10981
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||||||||||||||| |||||||| |||  || ||||||||||||| | || ||| || |||||||||    
T  10912 ttaagcagtgcgcaaataggaatccacgtgaggatggagaaaagcaacgcagaggagaatgtgatattca 10981  T

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Target: scaffold0277 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 388 - 461
Target Start/End: Complemental strand, 1141 - 1068
Alignment:
Q  388 gagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttactgaaacaaa 461  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  1141 gagacagaaattttgcagcaacaacatctagctttagtgtcaggcatgcaaaacttggtgcttactgaaacaaa 1068  T

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Target: scaffold0277; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 354 - 464
Target Start/End: Complemental strand, 10306 - 10196
Alignment:
Q  354 gaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagcaacagtatctagctttagtgtcagacatgcagaacttggtgcttact 453  Q
    ||||||||| ||||| |||||||||| | || ||||||||||||||| |||||| ||  ||||| |||||| ||||| |||||| |||||||| ||||||    
T  10306 gaaaaagcaaagattggtggaagtggtagtttcagagacagaaatttggcagcagcaacatctatctttagagtcaggcatgcaaaacttggttcttact 10207  T
Q  454 gaaacaaaaga 464  Q
    |||||||||||    
T  10206 gaaacaaaaga 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 10600 - 10484
Alignment:
Q  57 gtcagaacatacatttttgtttgatctgactttggaagaaaccagtgaacatttcagtcccacgtctgaaatggacaatgcacttttaaaaaatgaatgg 156  Q
    |||||||||| ||||||||||| ||||||  |||||||||   | |  |||||| |||| || ||||||||||||||| ||||||||||||| |||||||    
T  10600 gtcagaacattcatttttgtttaatctgaaattggaagaagagattacacatttgagtcgcatgtctgaaatggacaaagcacttttaaaaactgaatgg 10501  T
Q  157 atccatatcgagcttaa 173  Q
    |||||| | ||||||||    
T  10500 atccatgtggagcttaa 10484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 1571 - 1529
Alignment:
Q  120 gtctgaaatggacaatgcacttttaaaaaatgaatggatccat 162  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  1571 gtctgaaatggaaaaagcacttttaaaaaatgaatggatccat 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 10431 - 10362
Alignment:
Q  214 ttaagcagtgcgcaaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattca 283  Q
    ||||||||||||||||| |||||||| |||   ||||||||||||||| | || ||| || |||||||||    
T  10431 ttaagcagtgcgcaaatgggaatccacgtgagtaaggagaaaagcaacgcagaggagaatgtgatattca 10362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 406
Target Start/End: Original strand, 26139438 - 26139618
Alignment:
Q  226 caaattggaatccatgtgttgaaggagaaaagcaacacggatgaggatatgatattcagcagtcgtaatagaaagcgaaaattagatgaagatgtcaatg 325  Q
    ||||||||||||||| |||| ||||||||||| | || ||| |||||| |  ||||||  | || | || ||||| |||||||||||||| || |||||     
T  26139438 caaattggaatccatatgttcaaggagaaaagaagcatggaggaggatgtcgtattcactaatccttatggaaagagaaaattagatgaatatctcaata 26139537  T
Q  326 cttcattaccacaatttcatcctgtgcagaaaaagcatagatttgtggaagtggaacttacagagacagaaattttgcagc 406  Q
    |||||||| |||||||||  |||   |  |||||| ||||||||||||| || | | || |||||||||||||||||||||    
T  26139538 cttcattatcacaatttctccctccactaaaaaaggatagatttgtggatgtaggaattccagagacagaaattttgcagc 26139618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 476
Target Start/End: Original strand, 26139704 - 26139742
Alignment:
Q  438 gaacttggtgcttactgaaacaaaagaaaaggaacacca 476  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  26139704 gaacttggtgcttaatgaaacaaaagaaaaggaacacca 26139742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 26139336 - 26139376
Alignment:
Q  136 gcacttttaaaaaatgaatggatccatatcgagcttaagtt 176  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  26139336 gcacttttaaaaaatgaatggatccatgtagagcttaagtt 26139376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 62582 - 62639
Alignment:
Q  418 gctttagtgtcagacatgcagaacttggtgcttactgaaacaaaagaaaaggaacacc 475  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  62582 gctttagtgtcaggcatgccaaacttcgtgcttactgaaacaaaagaaaaggaacacc 62639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 29270609 - 29270563
Alignment:
Q  226 caaattggaatccatgtgttgaaggagaaaagcaacacggatgagga 272  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||||    
T  29270609 caaatgggaatccacgtgtggaatgagaaaagcaacacggatgagga 29270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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