View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_18 (Length: 483)
Name: NF18007_high_18
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 16 - 438
Target Start/End: Original strand, 40595140 - 40595575
Alignment:
| Q |
16 |
atgataactatcattagcataatcacaagaatcaaataaaattaggttcaaaccaataaaattactttgacttaacatgaccaattcatcacacctagtt |
115 |
Q |
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| T |
40595140 |
atgataactatcattagcataatcacaagaatcaaataaaattaggttcaaaccaataaaattactttgacttaacatgaccaattcatcacacctagtt |
40595239 |
T |
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| Q |
116 |
tcaaaacaaataagagtagtagcatgcctattaaagtgatgctgataacatgatatattcttatgaatctgttagaccatttcgggctcta--------- |
206 |
Q |
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| T |
40595240 |
tcaaaacaaataagagtagtagcatgcctattaaagtgatgctgataacatgatatattcttatgaatctgttagaccatttcgggctctacggggaagt |
40595339 |
T |
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| Q |
207 |
----gatacatcaagagagagttgtacgcatttcaagatagatgtttacacaaatgtctcaactcaagatagatttttatacaattgtctcaacaatatg |
302 |
Q |
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| T |
40595340 |
tctagatacatcaagagagagttgtacgcatttcaagatagatgtttacacaaatgtctcaactcaagatagatttttatacaattgtctcaacaatatg |
40595439 |
T |
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| Q |
303 |
caaagatataatttgtttcctcatgctctctagagagtgatacataaccaatttatttatctttgcaacttaaccttgtcagaaattaaaacttgctact |
402 |
Q |
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| T |
40595440 |
caaagatataatttgtttcctcatgctctctagagagtgatacataaccaatttatttatctttgcaacttaaccttgtcagaaattaaaacttgctact |
40595539 |
T |
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| Q |
403 |
ttttgcagtgcacacaacagcataaaggcatttggc |
438 |
Q |
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| T |
40595540 |
ttttgcagtgcacacaacagcataaaggcatttggc |
40595575 |
T |
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