View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_19 (Length: 462)
Name: NF18007_high_19
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_19 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Complemental strand, 45374937 - 45374503
Alignment:
| Q |
13 |
caaaggacaagacgactaaacattgtccatcattcataacttcaacaaaacgaaagcatggtttatgataatacacaggattttgcataaaatgtaataa |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45374937 |
caaaagacaagacgactaaacattgtccatcattcataacttcaacaaaacgaaagcatggtttatgataatacacagaattttgcataaaatgtaataa |
45374838 |
T |
|
| Q |
113 |
aattcaaactgtatatccacaatgttgtagacttacagttgttagtataaaaggatcaagtttgttacgttggatgatgcttcggttattgtcgttagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374837 |
aattcaaactgtatatccacaatgttgtagacttacggttgttagtataaaaggatcaagtttgttacgttggatgatgcttcggttattgtcgttagaa |
45374738 |
T |
|
| Q |
213 |
gaaagtaatcaatcaccagcaagtcattttctaagaaaattctagacagcactcaactaccaacaaagtgtgtattttctgtcatggaaaaaggtaacaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374737 |
gaaagtaatcaatcaccagcaagtcattttctaagaaaattctagacagcactcaactaccaacaaagtgtgtattttctgtcatggaaaaaggtaacat |
45374638 |
T |
|
| Q |
313 |
cactgatttaacttttagtaaagtatagatgtttaattgttgttagcaaaaagcgatcaaatctaacatctaaatcacatattagctagaagtgattaaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374637 |
cactgatttaacttttagtaaagtatagatgtttaattgttgttagcaaaaagtgatcaaatctaacatctaaatcacatattagctagaagtgattaaa |
45374538 |
T |
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| Q |
413 |
agcttttgtattaagctgcaaaatttagactatat |
447 |
Q |
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| T |
45374537 |
agcttttgtattaagctgcaaaatttagactatat |
45374503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 45371447 - 45371344
Alignment:
| Q |
132 |
caatgttgtagacttacagttgttagta-taaaaggatcaagtttgttacgttggatgatgcttcggttattgtcgttagaagaaagtaatcaatcacca |
230 |
Q |
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|||||||||||||||| ||||||||||| || |||||| |||||| | |||||||||| |||| | ||||||| |||||||||| ||| ||| ||||| |
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| T |
45371447 |
caatgttgtagacttatagttgttagtattacaaggatttagtttgatgggttggatgatacttcaggtattgtcattagaagaaaataaccaaccacca |
45371348 |
T |
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| Q |
231 |
gcaa |
234 |
Q |
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|||| |
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| T |
45371347 |
gcaa |
45371344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 260 - 444
Target Start/End: Complemental strand, 97544 - 97360
Alignment:
| Q |
260 |
agcactcaactaccaacaaagtgtgtattttctgtcatggaaaaaggtaacaacactgatttaacttttagtaaagtatagatgtttaattgttgttagc |
359 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
97544 |
agcactcaactaccaacaaagtgtgtattttctgtcacggaaaaaagtaacaacactaatttaacttttagtaaagtatagatgtttaattgttgttagc |
97445 |
T |
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| Q |
360 |
aaaaagcgatcaaatctaacatctaaatcacatattagctagaagtgattaaaagcttttgtattaagctgcaaaatttagacta |
444 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
97444 |
aaaaagtgatcaaatctaacatctaaatcacatattagccagaagtgattaaaagcttttgtattaagctgcaaaatttagacta |
97360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 244 - 437
Target Start/End: Complemental strand, 9094740 - 9094545
Alignment:
| Q |
244 |
taagaaaattctagaca--gcactcaactaccaacaaagtgtgtattttctgtcatggaaaaaggtaacaacactgatttaacttttagtaaagtataga |
341 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9094740 |
taagaaaattttagacatagcactcaactaccaacaaagtgtgtattttctgtcacggaaaaaagtaacaacactgatttaacttttagtaaagtataga |
9094641 |
T |
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| Q |
342 |
tgtttaattgttgttagcaaaaagcgatcaaatctaacatctaaatcacatattagctagaagtgattaaaagcttttgtattaagctgcaaaatt |
437 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9094640 |
tgtttaattgttgttagcaaaaagtgatcaaatctaacatctaaatcacatattagccagaagtgattaaaagcttttgtattaagctgcaaaatt |
9094545 |
T |
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