View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_20 (Length: 444)
Name: NF18007_high_20
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 35676923 - 35677333
Alignment:
| Q |
19 |
ctcagtgtattaaaccttctgagtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaaactgcaaaaatgatgctaagtattcaacagaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35676923 |
ctcagtgtattaaaccttctgagtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaatctgcaaaaatgatgctaagtattcaacagaaga |
35677022 |
T |
|
| Q |
119 |
atacttgtgtgaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtgatgaaggtggagttct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35677023 |
atacttgtgtgaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtgatgaaggtggagttct |
35677122 |
T |
|
| Q |
219 |
tccggagctaatgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35677123 |
tccggagctaatgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttat |
35677222 |
T |
|
| Q |
319 |
agtaaggcagaaaaagtagccaaacatatggatgcattttttgaaaaagttattgatgagcacatcattggtagtagatctgatggccatgttggtgaag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35677223 |
agtaaggcagaaaaagtagccaaacatatggatgcattttttgaaaaagttattgatgagcacatcattggtagtcgatctgatggccatgttggtgaag |
35677322 |
T |
|
| Q |
419 |
gaaacagtgat |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
35677323 |
gaaacagtgat |
35677333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 22 - 429
Target Start/End: Original strand, 35641510 - 35641917
Alignment:
| Q |
22 |
agtgtattaaaccttctgagtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaaactgcaaaaatgatgctaagtattcaacagaagaata |
121 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35641510 |
agtgtgttacaccttttgagtaacaaaagggttcaatcttatcgtcgtgttagagaggaagaaactgcaaaaatgatgcaaagtattcaacagaagaata |
35641609 |
T |
|
| Q |
122 |
cttgtgtgaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtgatgaaggtggagttcttcc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||| |||| ||||||| || | || |
|
|
| T |
35641610 |
cttgtgtgaatttaacagagttgtgttctacaattactaatgatataacatgtagggtggctctaggaaaaagatatggtgaaaaaggtggggtattgcc |
35641709 |
T |
|
| Q |
222 |
ggagctaatgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagt |
321 |
Q |
| |
|
|||||| |||||||||||||||||||| || | | ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35641710 |
ggagctgatgttggagtttggagagttgttgggttcattctttataggagattatataccttggcttaaatggttgggtaaggttaatggtttctatagc |
35641809 |
T |
|
| Q |
322 |
aaggcagaaaaagtagccaaacatatggatgcattttttgaaaaagttattgatgagcacatcattggtagtagatctgatggccatgttggtgaaggaa |
421 |
Q |
| |
|
|||||||||||||| || |||||| |||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
35641810 |
aaggcagaaaaagtggctaaacatttggatgaattttttgagaaagttattgaggagcacatcagtggtagtagatctgatggacatgttggtgagggaa |
35641909 |
T |
|
| Q |
422 |
acagtgat |
429 |
Q |
| |
|
||||||| |
|
|
| T |
35641910 |
ccagtgat |
35641917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 219 - 429
Target Start/End: Original strand, 35649043 - 35649253
Alignment:
| Q |
219 |
tccggagctaatgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35649043 |
tccggagctaatgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttat |
35649142 |
T |
|
| Q |
319 |
agtaaggcagaaaaagtagccaaacatatggatgcattttttgaaaaagttattgatgagcacatcattggtagtagatctgatggccatgttggtgaag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35649143 |
agtaaggcagaaaaagtagccaaacatatggatgcattttttgaaaaagttattgatgagcacatcattggtagtcgatctgatggccatgttggtgaag |
35649242 |
T |
|
| Q |
419 |
gaaacagtgat |
429 |
Q |
| |
|
||||||||||| |
|
|
| T |
35649243 |
gaaacagtgat |
35649253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 383
Target Start/End: Original strand, 35655972 - 35656222
Alignment:
| Q |
136 |
acagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtgatgaaggtggagttc---ttccggagctaatgt |
232 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| ||||||||||| ||| || |||||||||||||| | | | || | ||| |||| | ||| |
|
|
| T |
35655972 |
acagagttgtgctctacaattactaatgatatagtatgcagggtggctctgggaaaaagataccgtgaaggaagagggatgaaatttcaggaggtgttgt |
35656071 |
T |
|
| Q |
233 |
tggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcagaaaa |
332 |
Q |
| |
|
|||| ||||| ||||| | | || | | | ||||||||| || ||||||| ||| |||||||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
35656072 |
tggaatttggggagttgctgggtactgtatgtataggagactatataccttggcttgattggttgggaaaagttaatggtttttatagcaaagcagaaaa |
35656171 |
T |
|
| Q |
333 |
agtagccaaacatatggatgcattttttgaaaaagttattgatgagcacat |
383 |
Q |
| |
|
||| |||||||| |||||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
35656172 |
agtggccaaacaattggatgaattttttgaggaagtcattgaggagcacat |
35656222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 35655843 - 35655911
Alignment:
| Q |
19 |
ctcagtgtattaaaccttctgagtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaaact |
87 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
35655843 |
ctcagtgtgttacaccttctaagtaacaaaagagttcgatcttaccgttgtgttagagaggaagaaact |
35655911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 35646647 - 35646750
Alignment:
| Q |
230 |
tgttggagtttggagagttattagttattttctttataggagattacataccttcacttaattggttgggtaaggttaatggtttttatagtaaggcaga |
329 |
Q |
| |
|
|||||||||||||||||||||||| || | | | |||||||||||| ||||| | ||| |||||||||| || || |||||| ||||| | |||||||| |
|
|
| T |
35646647 |
tgttggagtttggagagttattaggtactgtatgtataggagattatataccatggcttgattggttgggaaaagtaaatggtctttatggcaaggcaga |
35646746 |
T |
|
| Q |
330 |
aaaa |
333 |
Q |
| |
|
|||| |
|
|
| T |
35646747 |
aaaa |
35646750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 35646448 - 35646494
Alignment:
| Q |
40 |
agtaacaaaagagttcaatcttatcgtcgtgttagagaggaagaaac |
86 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35646448 |
agtaacagaagagttcaatcttatcgtcgtgtgagagaggaagaaac |
35646494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 35646542 - 35646617
Alignment:
| Q |
128 |
tgaatttaacagagttgtgttctacagttactaatgatataacatgcagggtggttctaggcaaaagataccgtga |
203 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||| |||||||||||| || || |||| ||||||||| |
|
|
| T |
35646542 |
tgaatttaagtgagttgtgtgctacaattactaatgatatagcatgcagggtggcacttggaaaaacataccgtga |
35646617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University