View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_22 (Length: 421)
Name: NF18007_high_22
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 40385895 - 40386287
Alignment:
| Q |
13 |
atagacaatcattcaaacttcactcctttttggtttcaacctatttctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40385895 |
atagacaatcattcaaacttcactcctttttggtttcaacctaattctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttaaactctct |
40385994 |
T |
|
| Q |
113 |
tctttatttgtttcttatgatgctcaacaaaagtataatcataaccctgaattttattttgtcataagttaatctataaacaaagctgaaactatgctga |
212 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40385995 |
tctttatttgtttcatataatgctcaacaaaagtaaaatcataactctgaattttattttgtcataagttaatctataaacaaagctgaaactatgctga |
40386094 |
T |
|
| Q |
213 |
tttagatgtttcgattaataaaactttgcagctggaagaaaaccctatgcggttgctcagtatggctgtcttcttgtaactcatgcggtaaagaagacgg |
312 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40386095 |
tttatatgtttctattaataaaattttgcagctggaagaaaaccctatgctgttgctcagtatggctgtcttcttgtaactcatgcggtaaagaagacgg |
40386194 |
T |
|
| Q |
313 |
tagaggaagttgatggaaataaatgtgtatctgattggtttggcaaaggctatatgaaagttgaaagacaaaagaacaaactcatttcaaatc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40386195 |
tagaggaagttgatggaaataaatgtgtatctgattggtttggcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatc |
40386287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 40375648 - 40376042
Alignment:
| Q |
13 |
atagacaatcattcaaacttcactcctttttggtttcaacctatttctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctct |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
40375648 |
atagacaatcattcaaatttcactcctttctagtttcaagctaattctttctgcttgctgcaaacatgtgtgagttcaatttctttcacttcaactcttt |
40375747 |
T |
|
| Q |
113 |
tctttatttgtttcttatgatgctcaacaaaagtataatcataaccctgaatttt--attttgtcataagttaatctataaacaaagctgaaactatgct |
210 |
Q |
| |
|
|||||||||||||| ||| |||||||| | ||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40375748 |
tctttatttgtttcatataatgctcaaaagaagtaaaagcataactctgaattttttattttgtcataagttaatctataaacaaagctgaaattatgct |
40375847 |
T |
|
| Q |
211 |
gatttagatgtttcgattaataaaactttgcagctggaagaaaaccctatgcggttgctcagtatggctgtcttcttgtaactcatgcggtaaagaagac |
310 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||| |||| ||| |||||||| |||||||||||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
40375848 |
gatttagatgtttctattaatataaatttgcagcaggaaaaaacccctatgctgttgctcagtatggttgtcttcttgtaaatcatgctgtaaagaaggt |
40375947 |
T |
|
| Q |
311 |
ggtagaggaagttgatggaaataaatgtgtatctgattggtttggcaaaggctatatgaaagttgaaagacaaaagaacaaactcatttcaaatc |
405 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40375948 |
ggtagatgaagttgatggaaataaatctgtatctgattggtttagcaaaggctatatgaaagttgaaagacaaaagaacaaactctattcaaatc |
40376042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 178 - 405
Target Start/End: Original strand, 40332782 - 40333009
Alignment:
| Q |
178 |
aagttaatctataaacaaagctgaaactatgctgatttagatgtttcgattaataaaactttgcagctggaagaaaaccctatgcggttgctcagtatgg |
277 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||||| |||| ||||||||| |
|
|
| T |
40332782 |
aagtcaatctataaacaaagttgaaactatgctgatttagatgtttctgttaatataattttgcagctggaaaaaaaccttatgctgttgttcagtatgg |
40332881 |
T |
|
| Q |
278 |
ctgtcttcttgtaactcatgcggtaaagaagacggtagaggaagttgatggaaataaatgtgtatctgattggtttggcaaaggctatatgaaagttgaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40332882 |
ctgtcttcttgtaactcatgcggtaaagaaggcggtagaagaagttgatggaaataaatgtgtatctgattggtttggcaaaggctacatgaaagttgaa |
40332981 |
T |
|
| Q |
378 |
agacaaaagaacaaactcatttcaaatc |
405 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
40332982 |
agacaaaagaagaaactcatttcaaatc |
40333009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 251 - 405
Target Start/End: Original strand, 40283016 - 40283170
Alignment:
| Q |
251 |
aaaaccctatgcggttgctcagtatggctgtcttcttgtaactcatgcggtaaagaagacggtagaggaagttgatggaaataaatgtgtatctgattgg |
350 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40283016 |
aaaaccctatgctgttgttcagtatggttgtcttcttgtaactcatgcggtaaagaaggcggtagaggaagttgatggaaataaatgtttatctgattgg |
40283115 |
T |
|
| Q |
351 |
tttggcaaaggctatatgaaagttgaaagacaaaagaacaaactcatttcaaatc |
405 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40283116 |
tttagcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatc |
40283170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 40332698 - 40332785
Alignment:
| Q |
59 |
ctttctgcttgctgcaaatatgtgtgagttcaatttctttcacttcaactctcttctttatttgtttcttatgatgctcaacaaaagt |
146 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40332698 |
ctttctgcttgctgcaattatgtgtgagttcaatttctatcacttcaattctcttctttatttgtttcatatgatgctcaacaaaagt |
40332785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University