View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_26 (Length: 404)
Name: NF18007_high_26
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 13282867 - 13283241
Alignment:
| Q |
16 |
agaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatttcttttcaatatgatcctattagctactcacagaattttgatgagggttgtc |
115 |
Q |
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| T |
13282867 |
agaaaattcttgagggagagaagaatcttgggtgggcacaagcaaatttcttttcaatatgatcctattagctactcacagaattttgatgagggttgtc |
13282966 |
T |
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| Q |
116 |
atcttgatgatgaacctagacgcctttcccatgtgtgccaagatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattag |
215 |
Q |
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| T |
13282967 |
atcttgatgatgaaccaagacgcctttcccatgtgtgccaagatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattag |
13283066 |
T |
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| Q |
216 |
tcgttatgtcagtattttattcttcactagagttttatactcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttaca |
315 |
Q |
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| T |
13283067 |
tcgttatgtcactattttgttcttcactagagttttatactcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttaca |
13283166 |
T |
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| Q |
316 |
ttacttcattctgtatgcatctttatatattttgaagtataatatggagttatggacattaattatattgtttat |
390 |
Q |
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| T |
13283167 |
ttacttgattctgtatgcatctttatatattttgaagtataatatggagttatggacattaattatattgtttat |
13283241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 26533892 - 26533843
Alignment:
| Q |
184 |
tatttttatagatacaaatgttagtatattagtcgttatgtcagtatttt |
233 |
Q |
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| T |
26533892 |
tatttttttatatccaaatgttagtatattagttgttatgttagtatttt |
26533843 |
T |
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