View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_29 (Length: 397)
Name: NF18007_high_29
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 52905136 - 52905354
Alignment:
| Q |
18 |
agagttgctgacggtgaacttgggcaatgtatttatgtaggaaagaacaatgcacattattatttttataaataaagtattatattgatttggatccgaa |
117 |
Q |
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| T |
52905136 |
agagttgctgacggtgaacttgggcaatgtatttatgtaggaaagaacaatgcacattattatttttataaataaagtattatattgatttggatccgaa |
52905235 |
T |
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| Q |
118 |
aacatttttcgttccaaagtcgttttatgctgcactactacattacatatctgaatgcggctgattccataaagaaataatgaaagcttctgattaacaa |
217 |
Q |
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| T |
52905236 |
aacatttttcgttccaaagtcgttttatgctgcactactacattacatatctgaatgcggctgattccataaagaaataatgaaagcttctgattaacaa |
52905335 |
T |
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| Q |
218 |
aagaaatgcttattacctc |
236 |
Q |
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| T |
52905336 |
aagaaatgcttattacctc |
52905354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 52905438 - 52905481
Alignment:
| Q |
318 |
gcaaatatctaaaataatgctcaactactttgcttttcatgcat |
361 |
Q |
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| T |
52905438 |
gcaaatatctaaaataatgctcaactactttgcttttcatgcat |
52905481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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