View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18007_high_3 (Length: 652)
Name: NF18007_high_3
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 143 - 634
Target Start/End: Original strand, 29391587 - 29392083
Alignment:
| Q |
143 |
atttgaaagtaagaaactacagttgtttttctagaccgtgcgcttatttgaccagagaccaaattggaaaaatctatggctgtggggttaccactcgaat |
242 |
Q |
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| T |
29391587 |
atttgaaagtaagaaactacagttgtttttctagaccgtgcgcttatttgaccagagaccaaattagaaaaatctatggctgtggggttaccactcgaat |
29391686 |
T |
|
| Q |
243 |
ttatgtcattttccaccagttttgaacatccccaatgataaataaatgcaatggtctattacggnnnnnnnnnnnnnnnnnnnnngcaagcttggcacca |
342 |
Q |
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| T |
29391687 |
ttatgtcattttccaccagttttgaacatccccaatgataaataaatgcaatggtctattacggcttcttcttcttcttcttcttgcaagcttggcacca |
29391786 |
T |
|
| Q |
343 |
gctgtgtagagtagttgactacattacaacatcaaacaatatcccacttgcacctaacaaaatcacactctctactccaaaatcttactaacccattgtc |
442 |
Q |
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| T |
29391787 |
gctgtgtagagtagttgactacattacaacatcaaacaatatcccacttgcacctaacaaaatcacactctctactccaaaatcttactaacccattgtc |
29391886 |
T |
|
| Q |
443 |
attggatttcacgacaatgtattgtatatatacctacgcgcatgcactaatatatgc-ttccacttttacaatgtgagatggat---------------- |
525 |
Q |
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| T |
29391887 |
attggatttcacgacaatgtattgtatatatacctacgcgcatgcactaatatatgctttccacttttacaatgtgagatggatcatattcatgggtcaa |
29391986 |
T |
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| Q |
526 |
tcattctcattttttaacctaaaaccaaaatgatttaatgtaaccttgattaatcctcgtaatatattgtaccatggacaaaggtcctgaaataataatg |
625 |
Q |
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| T |
29391987 |
tcattctcattttttaacctaaaaccaaaatgatttaatgtaacctt-----------gtaatatattgtaccatggacaaaggt-ctgaaataataatg |
29392074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 29391482 - 29391588
Alignment:
| Q |
13 |
aatattacaagagtaaaacgagaacattctcttgtttaaaagactaagatcaaaatccgattaaacgacaaaatccataaacctatataaccctataaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
29391482 |
aatattacaagagtaaaacgagaacattctcttgtttaaa-gactaagatcaaaatccgattaaacgacaaaaaccataaacctatataaccccataaaa |
29391580 |
T |
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| Q |
113 |
aataacat |
120 |
Q |
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|||||||| |
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| T |
29391581 |
aataacat |
29391588 |
T |
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