View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18007_high_34 (Length: 372)

Name: NF18007_high_34
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18007_high_34
NF18007_high_34
[»] chr2 (3 HSPs)
chr2 (44-362)||(38084557-38084874)
chr2 (38-77)||(16535034-16535074)
chr2 (1-76)||(45049383-45049454)
[»] chr1 (4 HSPs)
chr1 (2-76)||(50248027-50248097)
chr1 (38-76)||(30455202-30455241)
chr1 (38-75)||(25821041-25821079)
chr1 (38-82)||(39787741-39787786)
[»] chr8 (3 HSPs)
chr8 (38-81)||(36482147-36482191)
chr8 (38-80)||(43167133-43167176)
chr8 (36-65)||(14725779-14725808)
[»] chr7 (1 HSPs)
chr7 (2-78)||(9379987-9380059)
[»] chr5 (4 HSPs)
chr5 (36-76)||(32466567-32466608)
chr5 (2-62)||(1931149-1931204)
chr5 (36-75)||(6041933-6041973)
chr5 (38-77)||(39151017-39151057)
[»] chr4 (2 HSPs)
chr4 (2-75)||(34684202-34684270)
chr4 (13-65)||(8017860-8017907)
[»] scaffold0515 (1 HSPs)
scaffold0515 (2-77)||(2475-2546)
[»] scaffold0306 (1 HSPs)
scaffold0306 (2-77)||(2475-2546)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 44 - 362
Target Start/End: Original strand, 38084557 - 38084874
Alignment:
Q  44 gacattttatcagttgagctagacttctggataaaaatatattaaccgcagaaaagttttaatatttcaactttatctcatatactagtacacaatttga 143  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38084557 gacattttatcagttgagcttgacttctggataaaaatatattaaccacgtaaaagttctaatatttcaactttatctcatatactagtacacaatttga 38084656  T
Q  144 tcccttattattgtttacgaaaagatttacatttaaagaggtcaaccct-cgtaaagatcatcacaataattttgagggataagttatttttgcagttgc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38084657 tcccttattattgtttacgaaaagatttacatttaaagaggtcaaccttacgtaaagatcatcacaataattttgagggataagttatttttgcagttgc 38084756  T
Q  243 acgtaaagtttgccagaaaaagtactaaacatgtatatatatacatcacaattaaaacaaaaatcttaattaacataattattagatttgctatcatatg 342  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  38084757 acgtaaagtttgccagaaaaagtactaaacatg--tatatatacatcacaattgaaacaaaactcttaattaacataattattagatttgctatcatatg 38084854  T
Q  343 atcagaaaattatgtgtgat 362  Q
    ||||||||||||||||||||    
T  38084855 atcagaaaattatgtgtgat 38084874  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 16535034 - 16535074
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggataa 77  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  16535034 aatttcgacattttatcagttgaactaggacttctggataa 16535074  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45049454 - 45049383
Alignment:
Q  1 attcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagct-agacttctggata 76  Q
    ||||||||| | ||||| ||||||||||||||     ||||||||||||||  |||||||||| |||||||||||||    
T  45049454 attcgaaccccggtcatgacatccggcctaac-----aatttcgacattttgccagttgagctaagacttctggata 45049383  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 50248097 - 50248027
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagcta-gacttctggata 76  Q
    |||||||| | ||||| |||||||||||||||||     |||||||||||||||||||||||| ||||||||||||    
T  50248097 ttcgaacctcggtcatgacatccggcctaacaat-----ttcgacattttatcagttgagctaggacttctggata 50248027  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 30455241 - 30455202
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggata 76  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30455241 aatttcgacattttatcagttgagctaggacttctggata 30455202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 25821041 - 25821079
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggat 75  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  25821041 aatttcgacattttatcagttgagctaggacttctggat 25821079  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 39787741 - 39787786
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggataaaaata 82  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  39787741 aatttcgacattttaccagttgagctaggacttgtggataaaaata 39787786  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 36482147 - 36482191
Alignment:
Q  38 aatttcgacattttatcagttgagct-agacttctggataaaaat 81  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||    
T  36482147 aatttcgacattttatcagttaagctaagacttctggataaaaat 36482191  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 43167176 - 43167133
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggataaaaa 80  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  43167176 aatttcgacattttatcagttgagctatgacttctagataaaaa 43167133  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 65
Target Start/End: Complemental strand, 14725808 - 14725779
Alignment:
Q  36 ataatttcgacattttatcagttgagctag 65  Q
    ||||||||||||||||||||||||||||||    
T  14725808 ataatttcgacattttatcagttgagctag 14725779  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 9380059 - 9379987
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagcta-gacttctggataaa 78  Q
    |||||||| | ||||| ||||||||||||||     ||||||||||||||  ||||||||||| ||||||||||||||    
T  9380059 ttcgaaccccggtcatgacatccggcctaac-----aatttcgacattttgccagttgagctaggacttctggataaa 9379987  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 32466608 - 32466567
Alignment:
Q  36 ataatttcgacattttatcagttgagcta-gacttctggata 76  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  32466608 ataatttcgacattttatcagttgaactaggacttctggata 32466567  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 1931149 - 1931204
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagc 62  Q
    |||||||| |||||||| |||||||||||||     |||||||||||||| ||||||||||    
T  1931149 ttcgaaccccagtcatagcatccggcctaac-----aatttcgacattttgtcagttgagc 1931204  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 6041933 - 6041973
Alignment:
Q  36 ataatttcgacattttatcagttgagcta-gacttctggat 75  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  6041933 ataatttcgacattttaccagttgagctaggacttctggat 6041973  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 39151017 - 39151057
Alignment:
Q  38 aatttcgacattttatcagttgagcta-gacttctggataa 77  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  39151017 aatttcgacattttaccagttgagctaggacttctggataa 39151057  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 34684270 - 34684202
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagctagacttctggat 75  Q
    |||||||| | ||||| |||||||||||||||||     |||| ||||||  ||||||||||||||||||||||    
T  34684270 ttcgaaccccggtcatgacatccggcctaacaat-----ttcggcattttgccagttgagctagacttctggat 34684202  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 8017907 - 8017860
Alignment:
Q  13 gtcataacatccggcctaacaatataatttcgacattttatcagttgagctag 65  Q
    |||||||||||||||||||||||     ||| |||||||||||||||||||||    
T  8017907 gtcataacatccggcctaacaat-----ttcaacattttatcagttgagctag 8017860  T

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Target: scaffold0515 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 2546 - 2475
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagcta-gacttctggataa 77  Q
    |||||||| | |||||| |||||||||||||     |||||||||||||| ||||||||| || |||||||||||||    
T  2546 ttcgaaccccggtcatagcatccggcctaac-----aatttcgacattttgtcagttgagttatgacttctggataa 2475  T

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Target: scaffold0306 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 2546 - 2475
Alignment:
Q  2 ttcgaaccacagtcataacatccggcctaacaatataatttcgacattttatcagttgagcta-gacttctggataa 77  Q
    |||||||| | |||||| |||||||||||||     |||||||||||||| ||||||||| || |||||||||||||    
T  2546 ttcgaaccccggtcatagcatccggcctaac-----aatttcgacattttgtcagttgagttatgacttctggataa 2475  T

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