View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18007_high_35 (Length: 372)
Name: NF18007_high_35
Description: NF18007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18007_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 13139575 - 13139934
Alignment:
| Q |
1 |
aatagcgaaggtggaagtataacaaattgaagaacctaccccagagaaaattcatcacgtatgtaattgtagactcaccatatatatatactgtttatag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13139575 |
aataacgaaggtggaagtataacaaattgaagaacctaccccagagaaaatccatcacgtatgtaattgtagactcaccatatatatagactgtttatag |
13139674 |
T |
|
| Q |
101 |
ctatgccctaacatgaacattannnnnnnnnnnnnaaaaactaaatatagccatatacataatcaatgggaaccagtcacaacactcgcaccaaccttgg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13139675 |
ctatgccctaacatgaacattatttttttctttttaaaaactaaatatagccatatacataatcaatgggaaccagtcacaacactcgcaccaaccttgg |
13139774 |
T |
|
| Q |
201 |
taacgatagtacttgtatgagcagatagaatgaaaatgatcacacaggtgtttgatgtgtagaatacaaaacaggtcacaaaaatcgtacttgtggttcg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13139775 |
taacgatagtacttgcatgagcagatagaatgaaaatgatcacacaggtgtttgatgtgtagaatacaaaacaggtcacaaaaatcgtacttgtggttcg |
13139874 |
T |
|
| Q |
301 |
agagcatacattttgcattatgcgatactctttgtggagggatcttgaatgtgtttagtg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13139875 |
agagcatacattttgcattatgcgatactctttgtggagggatcttgaatgtgtttagtg |
13139934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University